@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Wbm0061: (2015-11-28 )
MNEFKSIRNIAIIAHVDHGKTTLLDNMLKQSGTFRENQEVQERVMDSGNQERERGITILAKCTSIMWGDEKINIIDTPGHADFGGEVERVLCMVDGVLLLVDAAEGPMPQTKFVLSKALKADLKSIVIINKVDRPDSRIDEVLNEIYELFFNLDATNEQLDFPVLYASGRNGWCIKELSDKRKDLSPLFSTVIDYIKPANYDRNAPFAMLVTLLESDKFLGRILTGKIYQGIAKVNSDLKVLDLDGKVIKRGRLTKLLSFSGLKRIPVEQAVAGDIIAIAGLEKASVSATIVAPEVTTAISSTPVDPPTMAITLSVNDSPFAGQEGTKLTSAIIKDRLYAEAEINVAITVTPTPNDEAFEVGGRGELQLGVLIENMRREGFELSVSRPRVLFKEEGGKKLEPIEEVVIDVDDEYSGIIMKKLSFRKGEVTDMRPSGSGRTRLIFLVPSRGLIGYQGEFLTDSRGTGIINRLFHSYAPYKGPISRRRNGVLISTDKGEAVAYAIFNLQDRGIMFIKPQDRVYCGMVVGQHSRDNDLEINVLKGKQLTNVRAAGSDEAIKLTPPKTMTLEDMIAYIDDDELVEVTPKSIRLRKKFLDPNERRRAEKAKNKE

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

G4P_A_5(4ZCM)
?
[Raw transfer]




GDP_B_9(4ZCL)
?
[Raw transfer]




GDP_A_5(4ZCL)
?
[Raw transfer]




G4P_B_9(4ZCM)
?
[Raw transfer]




23 PsiBlast_CBE 94.7052% -97 - C1 -4ZCI - ? -
4 PsiBlast_PDB 94.6152% -94 - C1 -4ZCI - ? -
21 PsiBlast_CBE 92.2752% -93 - C1 -4ZCM 4.6 ?
5 PsiBlast_PDB 91.8452% -96 - C1 -4ZCL 5.5 ?
22 PsiBlast_CBE 91.5752% -93 - C1 -4ZCL 5.0 ?
1 PsiBlast_PDB 91.1952% -93 - C1 -4ZCM 5.4 ?
3 PsiBlast_PDB 85.2252% -80 - C1 -5A9X - ? -
2 PsiBlast_PDB 82.8252% -81 - C1 -5A9W - ? -
53 HHSearch 69.3928% -82 * C1 *2XEX - EFG_STAAU -
56 HHSearch 66.1222% -73 - C1 -2DY1 - ? -
58 HHSearch 61.8023% -74 - C1 -3JB9 - ? -
6 PsiBlast_PDB 57.2053% -63 - C1 -4ZCK - ? -
60 HHSearch 56.9422% -87 - C1 -2H5E - RF3_ECOLI -
81 Fugue 56.9222% -69 - C1 -3CB4 - LEPA_ECOLI -
59 HHSearch 55.8823% -62 - C1 -3TR5 - RF3_COXBU -
83 Fugue 54.2025% -44 - C1 -4M1K - ? -
78 HHSearch 54.1925%-108 - C1 -1S0U - IF2G_METJA -
61 HHSearch 54.0623% -79 - C1 -3VQT - RF3_DESVM -
73 HHSearch 52.0326% -84 - C1 -1KK1 - IF2G_PYRAB -
75 HHSearch 50.0720%-110 - C1 -3P26 - HBS1_YEAST -