@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Wbm0129: (2015-11-28 )
MTISPILPVYSPININFSYGKGIYLYNIDGKRYIDFHSGIAVSSLGHTNLQLTSVLNLQGERLWHISNTYNIPTANNFAEKLINNSFADTVFFANSGSEAVECGLKIARVYQNGKGNKNRYRILTFHGAFHGRTFLTCATNDKRKFSELLNPYIDWCDNIEPNIESVKKAISNDIGVMLIEPIQGQGGIKVMNDAFMKELRKLCDENDILLFFDCIQCGTGRTGKLFAYEHIGVKPDICALAKGIGGGFPLGVCLATEKAAQYITVGMHGSTFGGNPLATSVGNAVLDKLLSPGFLGNVEIRGKHLKNKLEDLASKFPIIEEVRGKGLMLGIKVKMDNQKFAGELSHRGLLTVGATSDNVVRIFPPLIITEKEIDEGIEILTQYLSEKSSDPYQYER

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

P00_B_26(4JEX)
ARGD_SALTY
[Raw transfer]



P00_B_19(4JEW)
ARGD_SALTY
[Raw transfer]



P00_B_18(4JEZ)
ARGD_SALTY
[Raw transfer]



PLP_A_3(2ORD)
ARGD_THEMA
[Raw transfer]



PLP_B_13(4JEY)
ARGD_SALTY
[Raw transfer]



PPE_D_4(1WKH)
ARGD_THET8
[Raw transfer]



POI_D_4(1WKG)
ARGD_THET8
[Raw transfer]



PLP_B_9(4JF1)
ARGD_SALTY
[Raw transfer]



PLP_B_6(2BYJ)
OAT_HUMAN
[Raw transfer]



PLP_A_3(2EO5)
?
[Raw transfer]



PLP_B_4(2PB0)
ARGD_SALTY
[Raw transfer]



PLP_A_3(1VEF)
ARGD_THET8
[Raw transfer]



PLP_B_4(1VEF)
ARGD_THET8
[Raw transfer]



PLP_A_5(2BYJ)
OAT_HUMAN
[Raw transfer]
10 PsiBlast_PDB 97.2841%-113 - C1 -2ORD - ARGD_THEMA -
2 PsiBlast_PDB 96.8441%-111 - C1 -2E54 - ARGD_THEMA -
124 HHSearch 96.6642%-113 - C1 -2ORD 4.9 ARGD_THEMA
24 PsiBlast_CBE 89.7339%-101 - C1 -4JEY 4.4 ARGD_SALTY
25 PsiBlast_CBE 89.1338%-100 - C1 -4JF1 4.5 ARGD_SALTY
3 PsiBlast_PDB 88.9739%-102 - C1 -4JEV - ARGD_SALTY -
22 PsiBlast_CBE 88.8239%-100 - C1 -4JEW 5.6 ARGD_SALTY
1 PsiBlast_PDB 88.4741%-105 - C1 -2EH6 - ARGD_AQUAE -
21 PsiBlast_CBE 88.2541%-105 - C1 -2EH6 - ARGD_AQUAE -
115 HHSearch 87.9736%-108 - C1 -3NX3 - ARGD_CAMJE -
4 PsiBlast_PDB 87.9339%-101 - C1 -4JEW - ARGD_SALTY -
13 PsiBlast_PDB 87.3538% -99 - C1 -4ADC - ASTC_ECOLI -
23 PsiBlast_CBE 87.2739%-100 - C1 -2PB0 3.5 ARGD_SALTY
16 PsiBlast_PDB 86.9836%-105 - C1 -3NX3 - ARGD_CAMJE -
6 PsiBlast_PDB 86.7539%-101 - C1 -2PB2 - ARGD_SALTY -
9 PsiBlast_PDB 86.7338%-101 - C1 -4JEZ - ARGD_SALTY -
7 PsiBlast_PDB 86.5739%-101 - C1 -4JEY - ARGD_SALTY -
5 PsiBlast_PDB 86.3539%-100 - C1 -2PB0 - ARGD_SALTY -
8 PsiBlast_PDB 86.2738%-101 - C1 -4JF1 - ARGD_SALTY -
27 PsiBlast_CBE 86.2638%-100 - C1 -4JEX 5.7 ARGD_SALTY
26 PsiBlast_CBE 85.2538% -98 - C1 -4JEZ 3.1 ARGD_SALTY
71 PsiBlast_CBE 84.6031%-101 - C1 -2BYJ 2.8 OAT_HUMAN
106 HHSearch 84.5634%-105 - C1 -1VEF 2.7 ARGD_THET8
39 PsiBlast_CBE 82.8334%-107 - C1 -1VEF 2.9 ARGD_THET8
70 PsiBlast_CBE 81.7331%-102 - C1 -2BYJ 3.2 OAT_HUMAN
37 PsiBlast_CBE 81.6234%-106 - C1 -1WKH 6.3 ARGD_THET8
38 PsiBlast_CBE 81.5834%-105 - C1 -1WKG 5.8 ARGD_THET8
64 PsiBlast_CBE 65.4334% -88 - C1 -2EO5 2.5 ?