@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Wbm0203: (2015-11-29 )
MRSNIRQLFYYIKPNLHYFIIAFIAVLSSALTILLFGRGLSNIIDSGAEHNFTTKLLVTIFIVLAISLTAFIRLYFIGIGSEKVIARIRYDLYGNITDLQPSFFENTSVQDVISALITDTSVLQSIMNSSLLTILRNFIILIGSVAMLLYTNLHLTTYAAAIIPMLLIIMTSLGKKVRNYARFAQNKLSELASFSEENFRSIVTIKSFVLEENEKIRFKEHLDSVSKSYVKLVFLRAILVTLVIACVIGSLVILLFFGIKEVLSNNITVGELSSFVFYSALAAGTVNNLSDNISDLQRGFGIVERLFEFKNMKSSIMDVDNPIKICGVKKGISFNGVTFFYESQPDKPALDNVSFSIETGQAVSIIGPSGSGKSTILKLLLRFHDPGKGSITIDGYNVKSIALSNLRSLFGLVPQDHIIFSCSIMENILYGKPGAEYEEVRQAAISAYAMEFIEKLPDKFDTFVGKRGLKLSEGQKQRIIIARAILKNPQILILDEATSALDYKSENLVQKALSKLMQNRTTIMITHRLSTALKTDKVIVVNHGKVEEVGTHDSLMSKGGLYAKLTKI

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_C_12(2IXF)
TAP1_RAT
[Raw transfer]




ATP_D_15(2IXF)

[Raw transfer]




ATP_B_8(2IXF)
TAP1_RAT
[Raw transfer]




ATP_A_5(2IXF)
TAP1_RAT
[Raw transfer]




ATP_A_7(1MV5)
LMRA_LACLA
[Raw transfer]




ATP_A_7(1MV5)
LMRA_LACLA
[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




105 HHSearch 90.0334%-114 - C2 -3ZDQ - ABCBA_HUMAN -
106 HHSearch 85.2431%-116 - C2 -3WMG - ? -
6 PsiBlast_PDB 85.0432%-118 - C2 -4Q4H - Y288_THEMA -
5 PsiBlast_PDB 84.5532%-122 - C2 -4Q4A - Y288_THEMA -
48 PsiBlast_CBE 84.0332%-117 - C2 -3WMG - ? -
34 PsiBlast_CBE 83.9231%-109 - C2 -4M2S - MDR1A_MOUSE -
8 PsiBlast_PDB 83.8932%-120 - C2 -4Q4J - Y288_THEMA -
32 PsiBlast_CBE 83.7631%-109 - C2 -4M2T - MDR1A_MOUSE -
43 PsiBlast_CBE 83.6031%-109 - C2 -4M1M - MDR1A_MOUSE -
4 PsiBlast_PDB 83.6032%-123 - C2 -3QF4 - Y288_THEMA -
44 PsiBlast_CBE 83.5231%-110 - C2 -4M1M - MDR1A_MOUSE -
40 PsiBlast_CBE 83.4231%-113 - C2 -4LSG - MDR1A_MOUSE -
35 PsiBlast_CBE 83.4031%-108 - C2 -3G61 - MDR1A_MOUSE -
41 PsiBlast_CBE 83.2931%-107 - C2 -3G5U - MDR1A_MOUSE -
20 PsiBlast_PDB 83.2831%-112 - C2 -4M2S - MDR1A_MOUSE -
39 PsiBlast_CBE 83.1931%-114 - C2 -4LSG - MDR1A_MOUSE -
33 PsiBlast_CBE 82.9731%-111 - C2 -4M2T - MDR1A_MOUSE -
38 PsiBlast_CBE 82.9431%-108 - C2 -3G60 - MDR1A_MOUSE -
42 PsiBlast_CBE 82.8031%-109 - C2 -3G5U - MDR1A_MOUSE -
37 PsiBlast_CBE 82.7431%-108 - C2 -3G60 - MDR1A_MOUSE -
112 HHSearch 56.9243%-110 - C2 -2FF7 6.2
87 PsiBlast_CBE 55.0535%-103 - C2 -2IXF 7.2 TAP1_RAT
86 PsiBlast_CBE 54.3035%-103 - C2 -2IXF 7.4 TAP1_RAT
85 PsiBlast_CBE 53.9835%-102 - C2 -2IXF 7.2
88 PsiBlast_CBE 53.8635%-101 - C2 -2IXF 7.2 TAP1_RAT
113 HHSearch 51.8645%-100 - C2 -1MV5 6.2 LMRA_LACLA
63 PsiBlast_CBE 50.3445% -97 - C2 -1MV5 6.3 LMRA_LACLA