@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Wbm0209: (2015-11-29 )
MDTVYVKYVCQEKPETMEEKLIYYFSQDKCEGNAEMKSLLGGKGANLAEMCNIGIPVPPGFTISTSACKSYYQGNGLSDDLCSTIKEYMTMLENDIGCKFGDSNNPLLVSIRSGSVNSMPGMLDTILNAGLNDTTVIGLAKKSGERFAYDSYCRFIMMYSNVVLQLDHQLFQSIIDNERQKNGAKSLADLNVDVLKRIVCDFKKIVHEKTEKHFPQDIEEQLLSSVNAVFASWQNERAVSYRKIHNIPENLGTAVNVQAMVFGNLNNNSATGVIFTRNPSTGEKKCFGEFLVNAQGEDVVSGVYTPIPINGKQENTMEKLMLSVYQELCEVCKKLEVHYKDMQDIEFTVQGGKLWILQTRSGKRTAEATVRITVDMVNEGTITKEEGILKIDPKIFDNLLHPVLEARGDQKVIGKGLPASPGVASGYVVFSASDAEKAAEQGKKIILVRLETSSEDINGMNAASGIITARGGMTSHAAVVTRGMGKPCICSVNGLHIDKNGNFFSVGDTTVNKGEPITINGGTGEVMLGILPTILPELSQEFKTIINWIDETKMIKVRANADTPKDAKIAKEFGAEGIGLCRTEHMFFASNRIEFIQRLIIADDKTERASALSKLEEMQKSDFKEIFSIMGGREVTIRLLDPPLHEFLPDNQSTIEKIAKSLNKSVESVKNKIVQLSEKNPMLGHRGCRLAISHPEIYSMQTRAILSAVDELKKEKKAEVKPEIMIPFIMSEKEFILICELLKKEAKNFDVNYSIGTMIELPRAALIADKLAKYAEFFSFGTNDLTQTTMGLSRDDSVSFLNSYKENNIFENDPFEVLDVEGVGELIKIAIERGKKTRKEIKLGVCGEHGADPRSIEFLIKSGVSYISCSPYRVPIAKLVAAQKSKCVG

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PEP_A_4(1VBH)
PPDK1_MAIZE
[Raw transfer]




PEP_A_2(2XZ7)
?
[Raw transfer]




PPR_A_7(1KC7)
PPDK_CLOSY
[Raw transfer]




PYR_A_4(2XZ9)
?
[Raw transfer]




PYR_A_4(2XZ9)
?
[Raw transfer]




2 PsiBlast_PDB 97.2850% -85 - C4 -1KBL - PPDK_CLOSY -
45 Fugue 97.2251% -85 - C4 -1KBL - PPDK_CLOSY -
3 PsiBlast_PDB 96.6050% -86 - C4 -1KC7 4.2 PPDK_CLOSY
5 PsiBlast_PDB 95.8050% -81 - C4 -1DIK - PPDK_CLOSY -
7 PsiBlast_PDB 95.7250% -92 - C4 -2R82 - PPDK_CLOSY -
1 PsiBlast_PDB 95.6850% -87 - C4 -2X0S - ? -
4 PsiBlast_PDB 95.5550% -81 - C4 -1GGO - PPDK_CLOSY -
8 PsiBlast_PDB 95.5050% -89 - C4 -1VBG - PPDK1_MAIZE -
44 Fugue 94.9351% -76 - C4 -1JDE - PPDK_CLOSY -
6 PsiBlast_PDB 94.3450% -77 - C4 -2DIK - PPDK_CLOSY -
9 PsiBlast_PDB 94.0450% -88 - C4 -1VBH 2.6 PPDK1_MAIZE
23 HHSearch 91.0448% -73 - C4 -1KBL - PPDK_CLOSY -
24 HHSearch 89.4348% -78 - C4 -1VBG - PPDK1_MAIZE -
22 HHSearch 89.4348% -74 - C4 -2X0S - ? -
49 Fugue 63.7249% -84 - C4 -1DIK - ? -
47 Fugue 59.4152% -83 - C4 -1KBL - PPDK_CLOSY -
46 Fugue 57.7252% -82 - C4 -1DIK - ? -
12 PsiBlast_PDB 50.8527% -70 - C4 -2XDF - PT1_ECOLI -
16 PsiBlast_PDB 49.2527% -70 - C4 -2L5H - PT1_ECOLI -
11 PsiBlast_PDB 49.0827% -67 - C4 -2KX9 - PT1_ECOLI -
28 HHSearch 47.5636% -54 - C4 -2XZ9 3.9 ?
13 PsiBlast_PDB 47.0130% -64 - C4 -2XZ7 3.5 ?
14 PsiBlast_PDB 46.2930% -61 - C4 -2XZ9 3.9 ?