@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Wbm0248: (2015-11-29 )
MKHKSEFLNFIQERGYLCQCTNIEGLDQLLLQNNYVVAYIGFDCTASSLHVGSLIQIMMLRHLQKFGYKPIVLLGGSTTKIGDPSGKDKARSVLPIEDINQNISGIKKALKKMVYFNDGKAGAIIVNNADWLDSIKYIDFLRDIGAHFSVNRMLSFDSAKTRLDREQNLSFLEFNYMLLQAYDFAELNKKYGCRLQIGGSDQWGNIVNGIELGKKLNLPELFGLTTPLLLSAQGKKMGKTESGTVWLDGDMLKPYDYWQYFRNIDDQDIGRFLRFFTDLPIDEIKKLESLKNQEINEAKKALATEVTKICHGDKEAELAQSSAVSVFENGDSSLLPDYTITKKQVANGISLIDLLHDIGLEPSKGAAKRLIQGNGCKVNDYTINDINYIINSKSFKDQSFIKLSAGKKRHIKVMVS

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

YSA_H_8(1VBM)
SYY_ECOLI
[Raw transfer]



YSA_C_3(1VBN)
SYY_ECOLI
[Raw transfer]



YSA_D_4(1VBN)
SYY_ECOLI
[Raw transfer]



YSA_B_4(2PID)
SYYM_HUMAN
[Raw transfer]



YSA_A_3(2PID)
SYYM_HUMAN
[Raw transfer]



YSA_G_7(1VBM)
SYY_ECOLI
[Raw transfer]



YSA_A_3(2PID)
SYYM_HUMAN
[Raw transfer]



TYA_C_3(3TS1)
SYY_GEOSE
[Raw transfer]



AZY_A_2(2YXN)
SYY_ECOLI
[Raw transfer]



AZY_A_2(2YXN)
SYY_ECOLI
[Raw transfer]



TYR_E_5(1X8X)
SYY_ECOLI
[Raw transfer]



TYR_D_4(4TS1)
SYY_GEOSE
[Raw transfer]



TYR_C_3(4TS1)
SYY_GEOSE
[Raw transfer]



IYR_C_3(1WQ3)
SYY_ECOLI
[Raw transfer]



TYR_C_3(1WQ4)
SYY_ECOLI
[Raw transfer]



TYR_S_3(1TYB)
SYY_GEOSE
[Raw transfer]



TYR_S_3(1TYD)
SYY_GEOSE
[Raw transfer]



TYR_C_3(1Y42)
SYYM_NEUCR
[Raw transfer]



TYR_S_3(1TYA)
SYY_GEOSE
[Raw transfer]



TYR_C_3(1Y42)
SYYM_NEUCR
[Raw transfer]



383_C_3(1JII)
SYY_STAAE
[Raw transfer]



485_C_3(1JIL)
SYY_STAAE
[Raw transfer]



545_C_3(1JIK)
SYY_STAAE
[Raw transfer]



629_C_3(1JIJ)
SYY_STAAE
[Raw transfer]



TYR_X_2(4OJM)
SYYM_NEUCR
[Raw transfer]
7 PsiBlast_PDB 93.3437%-105 - C4 -2JAN - SYY_MYCTU -
29 HHSearch 92.9337%-102 - C4 -2JAN - SYY_MYCTU -
22 PsiBlast_CBE 86.9946%-101 - C4 -4TS1 2.9 SYY_GEOSE
10 PsiBlast_PDB 86.4646% -99 - C4 -1TYD 3.4 SYY_GEOSE
12 PsiBlast_PDB 86.4046% -97 - C4 -1TYC - SYY_GEOSE -
11 PsiBlast_PDB 86.3346%-100 - C4 -1TYA 2.8 SYY_GEOSE
15 PsiBlast_PDB 85.6444% -90 - C4 -1WQ3 3.5 SYY_ECOLI
14 PsiBlast_PDB 85.5346% -96 - C4 -1TYB 2.8 SYY_GEOSE
13 PsiBlast_PDB 85.3046%-100 - C4 -4TS1 2.7 SYY_GEOSE
2 PsiBlast_PDB 85.0940% -95 - C4 -3TS1 6.6 SYY_GEOSE
16 PsiBlast_PDB 84.9944% -91 - C4 -2YXN 2.7 SYY_ECOLI
17 PsiBlast_PDB 84.8244% -92 - C4 -1WQ4 2.8 SYY_ECOLI
8 PsiBlast_PDB 84.6845% -91 - C4 -1X8X 3.2 SYY_ECOLI
1 PsiBlast_PDB 84.4640% -90 - C4 -2TS1 - SYY_GEOSE -
18 PsiBlast_PDB 83.7545% -90 - C4 -1VBN 7.1 SYY_ECOLI
9 PsiBlast_PDB 83.6846% -90 - C4 -1VBM 7.5 SYY_ECOLI
28 HHSearch 83.5540% -86 - C4 -2TS1 - SYY_GEOSE -
23 PsiBlast_CBE 83.4045% -88 * C4 *1VBN 6.6 SYY_ECOLI
26 PsiBlast_CBE 82.6834% -93 - C4 -4OJM 3.4 SYYM_NEUCR
5 PsiBlast_PDB 82.6539% -86 - C4 -1JIK 5.6 SYY_STAAE
6 PsiBlast_PDB 82.6139% -92 - C4 -1JIL 5.9 SYY_STAAE
21 PsiBlast_CBE 82.3646% -88 - C4 -1VBM 7.7 SYY_ECOLI
33 HHSearch 82.2943% -85 - C4 -2YXN 2.7 SYY_ECOLI
31 HHSearch 81.9335% -83 - C4 -1Y42 3.2 SYYM_NEUCR
3 PsiBlast_PDB 81.8039% -88 - C4 -1JII 2.7 SYY_STAAE
4 PsiBlast_PDB 81.0039% -94 - C4 -1JIJ 3.8 SYY_STAAE
27 PsiBlast_CBE 80.8834% -92 - C4 -1Y42 3.2 SYYM_NEUCR
32 HHSearch 78.2435% -90 - C4 -2PID 7.5 SYYM_HUMAN
25 PsiBlast_CBE 74.7938% -83 - C4 -2PID 6.8 SYYM_HUMAN
19 PsiBlast_PDB 74.7338% -81 - C4 -2PID 7.6 SYYM_HUMAN