@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Wbm0273: (2015-11-29 )
MNNIVIVGLQWGDEGKGKIVDYLSENADTVVRFQGGNNAGHTIVVDDEVYKLNLLPSAVLRTGKISIIGNGVALDPYALISEIESLRVKGMDINPNNLMVSESCPLILSVHKEKEKLFEDLNGNHKIGTTNKGIGPCYEDKVGRRAIRLCDLENADELNKRLDTLLNYHNAIRKGLSYRVIKKEEMLREIEEIAEKIIPYRKPVWKILNDFVKEGKKIIFEGAQGTFLDIDHGTYPFVTSSNTIASQVMTGSGLSSNAYVIGVAKAYTTRVGNGPFPTEQRNEVGNSLFTIGKELGTVSNRKRRCGWFDAVLVRQAVQLSGVSSIILTKLDVLDSFDKIKICTGYQYSGKIYDYLPASRSIQEELEPIYEEFPGWKENTQGEKLAEKLPVNLIKYVKRVEELIGIPIHLISAGPKREDVIKLKDFKFSESVLVSY

Atome Classification :

(44 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

RPD_A_5(1QF4)
PURA_ECOLI
[Raw transfer]




DOI_A_3(2DGN)
PURA1_MOUSE
[Raw transfer]




DOI_A_3(2GCQ)
PURA_ECOLI
[Raw transfer]




2SA_A_5(1MEZ)
PURA1_MOUSE
[Raw transfer]




RPL_A_5(1QF5)
PURA_ECOLI
[Raw transfer]




RPL_A_5(1QF5)
PURA_ECOLI
[Raw transfer]




IMP_C_3(1KJX)
PURA_ECOLI
[Raw transfer]




IMP_A_8(1IWE)
PURA1_MOUSE
[Raw transfer]




IMP_A_5(1KKF)
PURA_ECOLI
[Raw transfer]




AMP_A_3(4M9D)
PURA_BACAN
[Raw transfer]




IMP_E_5(1KKB)
PURA_ECOLI
[Raw transfer]




AMP_E_5(1MF1)
PURA1_MOUSE
[Raw transfer]




AMP_C_3(1SON)
PURA_ECOLI
[Raw transfer]




H5P_A_6(1SOO)
PURA_ECOLI
[Raw transfer]




GDP_A_6(1P9B)
PURA_PLAFA
[Raw transfer]




GDP_A_5(1LON)
PURA1_MOUSE
[Raw transfer]




GPX_A_4(1CH8)
PURA_ECOLI
[Raw transfer]




GDP_D_4(1DJ2)
PURA_ARATH
[Raw transfer]




GDP_A_4(2GCQ)
PURA_ECOLI
[Raw transfer]




GDP_A_4(1CIB)
PURA_ECOLI
[Raw transfer]




GDP_A_5(1CG3)
PURA_ECOLI
[Raw transfer]




GDP_A_5(1MF0)
PURA1_MOUSE
[Raw transfer]




GDP_A_5(1CG0)
PURA_ECOLI
[Raw transfer]




GDP_A_6(1P9B)
PURA_PLAFA
[Raw transfer]




GDP_A_4(1CG4)
PURA_ECOLI
[Raw transfer]




GDP_A_5(1CG1)
PURA_ECOLI
[Raw transfer]




GDP_C_3(1DJ2)
PURA_ARATH
[Raw transfer]




GDP_A_6(1LNY)
PURA1_MOUSE
[Raw transfer]




GDP_A_4(2DGN)
PURA1_MOUSE
[Raw transfer]




GDP_C_3(1DJ2)
PURA_ARATH
[Raw transfer]




GDP_D_4(1DJ3)
PURA_WHEAT
[Raw transfer]




GDP_B_7(1LNY)
PURA1_MOUSE
[Raw transfer]




GCP_B_4(1HOP)
PURA_ECOLI
[Raw transfer]




GTP_C_3(1LOO)
PURA1_MOUSE
[Raw transfer]




DPO_A_3(1KKF)
PURA_ECOLI
[Raw transfer]




GDP_C_3(1DJ3)
PURA_WHEAT
[Raw transfer]




GDP_A_2(2V40)
PURA2_HUMAN
[Raw transfer]




GDP_A_2(2V40)
PURA2_HUMAN
[Raw transfer]




HAD_C_3(1KKB)
PURA_ECOLI
[Raw transfer]




IMP_B_7(1IWE)
PURA1_MOUSE
[Raw transfer]




CIT_A_2(3R7T)
PURA_CAMJE
[Raw transfer]




CIT_A_2(3R7T)
PURA_CAMJE
[Raw transfer]




41 HHSearch 97.7648% -78 - C3 -3HID - PURA_YERPE -
1 PsiBlast_PDB 97.6347% -82 - C3 -3HID - PURA_YERPE -
22 PsiBlast_CBE 97.0544% -87 - C3 -3UE9 - PURA_BURTA -
5 PsiBlast_PDB 97.0346% -78 - C3 -1QF5 6.6 PURA_ECOLI
23 PsiBlast_CBE 96.7644% -89 - C3 -3UE9 - PURA_BURTA -
3 PsiBlast_PDB 96.7346% -79 - C3 -1CH8 7.6 PURA_ECOLI
8 PsiBlast_PDB 96.5846% -79 - C3 -1SON 5.4 PURA_ECOLI
21 PsiBlast_CBE 96.5546% -84 - C3 -1HOP 5.9 PURA_ECOLI
16 PsiBlast_PDB 96.5146% -78 - C3 -1CG3 7.6 PURA_ECOLI
49 Fugue 96.4146% -75 * C3 *1QF5 6.6 PURA_ECOLI
50 Fugue 96.3546% -85 - C3 -1ADE - PURA_ECOLI -
4 PsiBlast_PDB 96.3446% -79 - C3 -1QF4 7.1 PURA_ECOLI
13 PsiBlast_PDB 96.2946% -77 - C3 -1KKB 6.7 PURA_ECOLI
17 PsiBlast_PDB 96.2646% -75 - C3 -1CG4 7.8 PURA_ECOLI
9 PsiBlast_PDB 96.2546% -78 - C3 -1SOO 5.2 PURA_ECOLI
7 PsiBlast_PDB 96.2046% -77 - C3 -2GCQ 8.3 PURA_ECOLI
14 PsiBlast_PDB 96.1146% -77 - C3 -1KKF 7.1 PURA_ECOLI
10 PsiBlast_PDB 96.1146% -83 - C3 -1ADE - PURA_ECOLI -
15 PsiBlast_PDB 96.0546% -78 - C3 -1CG1 7.4 PURA_ECOLI
6 PsiBlast_PDB 95.7146% -77 - C3 -1CIB 6.9 PURA_ECOLI
12 PsiBlast_PDB 94.7646% -77 - C3 -1KJX 5.5 PURA_ECOLI
2 PsiBlast_PDB 94.7446% -75 - C3 -1CG0 7.3 PURA_ECOLI
40 HHSearch 92.8242% -83 - C3 -2V40 6.2 PURA2_HUMAN
44 HHSearch 92.5246% -81 - C3 -3R7T 3.1 PURA_CAMJE
19 PsiBlast_PDB 92.3545% -72 - C3 -4M9D 6.6 PURA_BACAN
20 PsiBlast_PDB 92.2445% -87 - C3 -3R7T 3.1 PURA_CAMJE
28 PsiBlast_CBE 91.7942% -70 - C3 -1LOO 6.1 PURA1_MOUSE
30 PsiBlast_CBE 91.3042% -67 - C3 -1LNY 7.2 PURA1_MOUSE
24 PsiBlast_CBE 91.2942% -69 - C3 -2DGN 7.7 PURA1_MOUSE
32 PsiBlast_CBE 91.2742% -70 - C3 -1IWE 5.9 PURA1_MOUSE
31 PsiBlast_CBE 91.0442% -68 - C3 -1LNY 6.9 PURA1_MOUSE
45 HHSearch 91.0139% -71 - C3 -1P9B 7.6 PURA_PLAFA
43 HHSearch 90.9841% -76 - C3 -1DJ2 6.8 PURA_ARATH
29 PsiBlast_CBE 90.9442% -68 - C3 -1LON 6.9 PURA1_MOUSE
36 PsiBlast_CBE 90.9140% -76 - C3 -2V40 6.3 PURA2_HUMAN
33 PsiBlast_CBE 90.9142% -66 - C3 -1IWE 6.2 PURA1_MOUSE
26 PsiBlast_CBE 90.7142% -64 - C3 -1MF0 6.7 PURA1_MOUSE
27 PsiBlast_CBE 90.6442% -67 - C3 -1MEZ 7.2 PURA1_MOUSE
38 PsiBlast_CBE 90.3241% -79 - C3 -1DJ2 6.8 PURA_ARATH
37 PsiBlast_CBE 90.0341% -80 - C3 -1DJ2 6.8 PURA_ARATH
35 PsiBlast_CBE 90.0040% -77 - C3 -1DJ3 6.2 PURA_WHEAT
25 PsiBlast_CBE 89.9142% -67 - C3 -1MF1 5.7 PURA1_MOUSE
34 PsiBlast_CBE 89.8940% -77 - C3 -1DJ3 6.4 PURA_WHEAT
39 PsiBlast_CBE 89.7538% -76 - C3 -1P9B 7.6 PURA_PLAFA