@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Wbm0298: (2015-11-30 )
MKIRVGINGLGRIGRSVLRAIHEVGKYNEQIEVVAVNGSLSTEQHAHLIRYDSVHGKFNGDIGFNESENWISTNGKKFSLYRERNPENIPWDVDVVLECTGAFNKRAEAAKHNTGKVIVSAPVSDADITIVYGVNNDMLKKEHKVISAGSCTTNCLAPVVKVLHFNLDMKSGFMTTVHAYTNDQNVLDGNHRDLRRARACGLSIVPTTTGAAKTIGSVIPELKGKLDGTAIRVPVANVSMVDLKFTTDKKVTAKEINEIFKNSVNDVLSICKEPLVSIDFVHNPYSAIVDLAGTYVTGDICRVAAWYDNEWAFSLRMLDIALLCYNRI

Atome Classification :

(41 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDP_O_12(1RM4)
G3PA_SPIOL
[Raw transfer]




NDP_O_12(1RM4)
G3PA_SPIOL
[Raw transfer]




NAD_B_4(3L0D)
?
[Raw transfer]




NAD_A_3(3L0D)
?
[Raw transfer]




NAD_A_13(1NBO)
G3PA_SPIOL
[Raw transfer]




NAD_B_14(1NBO)
G3PA_SPIOL
[Raw transfer]




NAD_A_3(3CPS)
?
[Raw transfer]




NDP_B_16(1RM5)
G3PA_SPIOL
[Raw transfer]




NAD_O_12(1NBO)
G3PA_SPIOL
[Raw transfer]




NDP_B_14(1RM4)
G3PA_SPIOL
[Raw transfer]




NDP_O_15(1RM3)
G3PA_SPIOL
[Raw transfer]




NDP_A_13(1RM4)
G3PA_SPIOL
[Raw transfer]




NAD_A_3(3PYM)
G3P3_YEAST
[Raw transfer]




NAD_B_4(2EP7)
G3P_AQUAE
[Raw transfer]




NDP_O_14(1RM5)
G3PA_SPIOL
[Raw transfer]




NAD_A_3(2EP7)
G3P_AQUAE
[Raw transfer]




NAD_A_3(2EP7)
G3P_AQUAE
[Raw transfer]




NDP_A_15(1RM5)
G3PA_SPIOL
[Raw transfer]




NAD_O_13(1HDG)
G3P_THEMA
[Raw transfer]




NAD_Q_15(1HDG)
G3P_THEMA
[Raw transfer]




NAD_O_3(3H9E)
G3PT_HUMAN
[Raw transfer]




NDP_A_16(1RM3)
G3PA_SPIOL
[Raw transfer]




NAD_O_13(1HDG)
G3P_THEMA
[Raw transfer]




NDP_B_17(1RM3)
G3PA_SPIOL
[Raw transfer]




1 PsiBlast_PDB 96.2352%-116 - C3 -3L0D 8.0 ?
21 PsiBlast_CBE 95.2352%-117 - C3 -3L0D 8.9 ?
97 PsiBlast_CBE 94.3347%-123 - C3 -2DUU - ? -
127 HHSearch 93.8850%-119 * C3 *3CMC - G3P_GEOSE -
98 PsiBlast_CBE 93.8847%-120 - C3 -2DUU - ? -
27 PsiBlast_CBE 93.2650%-116 - C3 -3GNQ - ? -
118 HHSearch 93.0451%-119 - C3 -3DOC - ? -
101 PsiBlast_CBE 92.7647%-123 - C3 -2DUU - ? -
22 PsiBlast_CBE 92.7250%-116 - C3 -3GNQ - ? -
42 PsiBlast_CBE 92.6849%-117 - C3 -3DBV - G3P_GEOSE -
100 PsiBlast_CBE 92.6647%-121 - C3 -2DUU - ? -
5 PsiBlast_PDB 92.6450%-115 - C3 -1DBV - G3P_GEOSE -
117 HHSearch 92.5748%-116 - C3 -1RM4 7.9 G3PA_SPIOL
99 PsiBlast_CBE 92.4747%-120 - C3 -2DUU - ? -
104 PsiBlast_CBE 92.3747%-117 - C3 -2D2I - ? -
6 PsiBlast_PDB 92.3150%-117 - C3 -2DBV - G3P_GEOSE -
106 Fugue 92.0949%-121 - C3 -1GD1 - G3P_GEOSE -
2 PsiBlast_PDB 92.0950%-116 - C3 -3GNQ - ? -
50 PsiBlast_CBE 92.0749%-114 - C3 -2GD1 - G3P_GEOSE -
57 PsiBlast_CBE 92.0349%-115 - C3 -1NPT - G3P_GEOSE -
121 HHSearch 91.7449%-113 - C3 -1HDG 8.9 G3P_THEMA
92 PsiBlast_CBE 90.1045%-112 - C3 -1RM3 8.4 G3PA_SPIOL
19 PsiBlast_PDB 90.0645%-113 - C3 -1RM4 7.9 G3PA_SPIOL
75 PsiBlast_CBE 89.8845%-111 - C3 -1RM4 6.6 G3PA_SPIOL
76 PsiBlast_CBE 89.7745%-113 - C3 -1NBO 8.8 G3PA_SPIOL
124 HHSearch 89.7551%-115 - C3 -2EP7 8.6 G3P_AQUAE
90 PsiBlast_CBE 89.0445%-113 - C3 -1RM3 8.0 G3PA_SPIOL
18 PsiBlast_PDB 88.9545%-111 - C3 -1NBO 9.0 G3PA_SPIOL
93 PsiBlast_CBE 88.9145%-114 - C3 -1RM5 8.0 G3PA_SPIOL
94 PsiBlast_CBE 88.9045%-111 - C3 -1RM5 7.7 G3PA_SPIOL
77 PsiBlast_CBE 88.7745%-113 - C3 -1NBO 8.5 G3PA_SPIOL
74 PsiBlast_CBE 88.4945%-114 - C3 -1RM4 8.2 G3PA_SPIOL
95 PsiBlast_CBE 88.4645%-115 - C3 -1RM5 7.8 G3PA_SPIOL
91 PsiBlast_CBE 88.3645%-114 - C3 -1RM3 7.5 G3PA_SPIOL
4 PsiBlast_PDB 88.2948%-107 - C3 -2EP7 8.6 G3P_AQUAE
32 PsiBlast_CBE 88.0248%-104 - C3 -2EP7 8.9 G3P_AQUAE
126 HHSearch 87.4240%-119 - C3 -3PYM 8.3 G3P3_YEAST
66 PsiBlast_CBE 86.7747%-104 - C3 -1HDG 9.2 G3P_THEMA
16 PsiBlast_PDB 86.7347%-104 - C3 -1HDG 8.9 G3P_THEMA
122 HHSearch 86.0842%-116 - C3 -3CPS 8.3 ?
129 HHSearch 82.2438%-113 - C3 -3H9E 8.4 G3PT_HUMAN