@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Wbm0312: (2015-11-30 )
MVQATYASISLPGISSVEDVLEDARFGKLFILVDDENRENEGDLIVLAEKLKPEHVAFMVRYGTGIVFLAMTRLHMGRLGLEFMRRSNIDEKLTPHTAFTTSIDARYGIATGVSAHDRTHTILTAIDGKSTQDDIITPGHVFPIIANDGGVLARNGHTEASVEIAKLIGYNHAAVGCELVNDDGSMMRLPELLKFAEQHNIKLTTIDKLIRYIKKLS

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

5RP_B_5(4P77)
RIBB_VIBCH
[Raw transfer]




5RP_A_3(4P77)
RIBB_VIBCH
[Raw transfer]




5SP_A_3(3LQU)
RIBB_SALTY
[Raw transfer]




RES_B_7(4P6P)
RIBB_VIBCH
[Raw transfer]




RES_B_4(4P6C)
RIBB_VIBCH
[Raw transfer]




5RP_D_4(1TKU)
RIB3_CANAL
[Raw transfer]




5RP_A_3(4P8E)
RIBB_VIBCH
[Raw transfer]




5RP_C_3(1TKU)
RIB3_CANAL
[Raw transfer]




5RP_B_8(4P8E)
RIBB_VIBCH
[Raw transfer]




RES_A_3(4P6C)
RIBB_VIBCH
[Raw transfer]




5RP_A_2(2RIU)
RIB3_CANAL
[Raw transfer]




GOL_A_5(1K4O)
RIB3_MAGO7
[Raw transfer]




GOL_B_10(3MIO)
RIBBA_MYCTA
[Raw transfer]




GOL_A_8(4FFJ)
?
[Raw transfer]




GOL_A_5(3MIO)
RIBBA_MYCTA
[Raw transfer]




EDO_A_3(4P6D)
RIBB_VIBCH
[Raw transfer]




34 PsiBlast_CBE 94.5547%-105 - C8 -4I14 - RIBBA_MYCTA -
56 HHSearch 94.3348%-103 - C8 -3MIO 2.4 RIBBA_MYCTA
52 HHSearch 92.7441%-118 - C8 -1TKS - RIB3_CANAL -
11 PsiBlast_PDB 92.3547%-105 - C8 -3MIO - RIBBA_MYCTA -
35 PsiBlast_CBE 92.2040%-118 - C8 -2RIU 3.5 RIB3_CANAL
19 PsiBlast_PDB 92.0040%-119 - C8 -1TKS - RIB3_CANAL -
36 PsiBlast_CBE 91.5840%-117 - C8 -1TKU 3.3 RIB3_CANAL
28 PsiBlast_CBE 91.5147%-106 - C8 -3MIO 3.1 RIBBA_MYCTA
20 PsiBlast_PDB 91.4140%-116 - C8 -1TKU 3.3 RIB3_CANAL
17 PsiBlast_PDB 91.0647%-104 - C8 -4I14 - RIBBA_MYCTA -
2 PsiBlast_PDB 89.3744%-112 - C8 -4P6D 2.7 RIBB_VIBCH
12 PsiBlast_PDB 89.3347%-105 - C8 -3MK5 - RIBBA_MYCTA -
4 PsiBlast_PDB 88.9844%-110 - C8 -4P77 3.2 RIBB_VIBCH
55 HHSearch 88.9138%-111 - C8 -1K4I - RIB3_MAGO7 -
10 PsiBlast_PDB 88.9147%-110 - C8 -3MGZ - RIBBA_MYCTA -
14 PsiBlast_PDB 88.8843%-109 - C8 -3LRJ - RIBB_SALTY -
32 PsiBlast_CBE 88.7643%-107 - C8 -3LRJ - RIBB_SALTY -
30 PsiBlast_CBE 88.6443%-108 - C8 -3LRJ - RIBB_SALTY -
24 PsiBlast_CBE 88.6344%-111 - C8 -4P6D - RIBB_VIBCH -
38 PsiBlast_CBE 88.3637%-113 - C8 -1K4O 3.6 RIB3_MAGO7
22 PsiBlast_CBE 87.9444%-116 - C8 -4P77 3.9 RIBB_VIBCH
5 PsiBlast_PDB 86.8044%-106 - C8 -4P8E 3.2 RIBB_VIBCH
21 PsiBlast_CBE 86.7344%-106 - C8 -4P8E 3.6 RIBB_VIBCH
1 PsiBlast_PDB 86.6344%-107 - C8 -4P6C 4.4 RIBB_VIBCH
13 PsiBlast_PDB 85.8943%-101 - C8 -3LQU 3.9 RIBB_SALTY
23 PsiBlast_CBE 85.6644%-111 - C8 -4P6P 3.1 RIBB_VIBCH
25 PsiBlast_CBE 85.6244%-106 - C8 -4P6C 5.0 RIBB_VIBCH
18 PsiBlast_PDB 85.2541%-117 - C8 -4FFJ 3.0 ?