@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Wbm0344: (2015-11-30 )
MEIDISKYRNIGIMAHIDAGKTTTTERILFYTGKQNRIGEVHDGAASMDWMEQEKERGITITSAATTCFWNGYRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDGVAGVEPQSETVWRQADKYSVPRVCFINKMDRIGVDFYRCVNMIKSKLGVVPLVIQLPIGSEKDFKGVVDLISMKAIIWEEETLGAKFSYEDIPSDLLDKAQEYRNLLLDTAAGMDDEAMNAYFESNDLPVDLLKRCVRSGAIKGAFVPVLCGSAFKNKGVQPLLDSIVDFLPSPVDVDEVVGTDPKDLEKKIKVKPSEKEKFVALAFKVMTDKFVGSLTFIRIYSGKLKSKSTVLNAGKNETEGIGRMLLMHANNREDINEAKVGDIVALVGLKKAITGDTLCSSDFPILLERMEFPEPVIEIAVEPRTTSDQEKLGIALSRLVAEDPSLRMSVNAENGQTILKGMGELHLEIITDRVKREFNVDVNIGAPQVAYRETITKSVEIDYTHKKQSGGAGQFAKVKILFEPLEAGSGFQFESKIVGGAIPKEYIPGVQNGLELIKEGGMVSGFPVIDFKATLIDGAFHEVDSSPLAFELAAKGAFKEMASKAGPKMLEPIMKVEIITPEEYMGDIMGDVNSRRGQVLSMETHNNSTIILALVPLASMFGYINVLRSMSQGRAQYSMHFSCYEQVPQYVVNELKYN

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GDP_A_2(2BM1)
EFG_THETH
[Raw transfer]



GDP_C_3(2EFG)
EFG_THET8
[Raw transfer]



GCP_A_2(2J7K)
EFG_THETH
[Raw transfer]



GDP_A_3(1FNM)
EFG_THETH
[Raw transfer]



GDP_A_3(4M1K)
?
[Raw transfer]



GDP_A_3(4MYT)
EFG_THETH
[Raw transfer]



GDP_A_2(2BM0)
?
[Raw transfer]



GDP_A_3(4MYU)
EFG_THETH
[Raw transfer]
66 HHSearch 95.8453% -98 - C1 -2XEX - EFG_STAAU -
21 PsiBlast_CBE 95.7353% -97 - C1 -2XEX - EFG_STAAU -
5 PsiBlast_PDB 95.3955% -91 - C1 -2J7K 7.3 EFG_THETH
11 PsiBlast_PDB 95.0555% -90 - C1 -1FNM 7.3 EFG_THETH
14 PsiBlast_PDB 94.8253% -98 - C1 -2XEX - EFG_STAAU -
58 Fugue 94.6655% -92 - C1 -4M1K - ? -
6 PsiBlast_PDB 94.4255% -93 - C1 -4M1K 6.3 ?
8 PsiBlast_PDB 94.2455% -96 - C1 -2BM0 6.6 ?
2 PsiBlast_PDB 93.9255% -89 - C1 -2OM7 - ? -
10 PsiBlast_PDB 93.0655% -93 - C1 -4MYU 5.8 EFG_THETH
7 PsiBlast_PDB 92.5855% -92 - C1 -2BM1 6.6 EFG_THETH
1 PsiBlast_PDB 91.9455% -88 - C1 -4MYT 5.8 EFG_THETH
3 PsiBlast_PDB 91.8655% -92 - C1 -2EFG 7.1 EFG_THET8
9 PsiBlast_PDB 91.8355% -84 - C1 -3IZP - ? -
57 Fugue 91.4854% -89 - C1 -1ELO - ? -
13 PsiBlast_PDB 90.7756% -74 - C1 -3J0E - EFG_ECOLI -
68 HHSearch 80.6131% -80 - C1 -2DY1 - ? -
17 PsiBlast_PDB 79.0230% -85 - C1 -2DY1 - ? -
16 PsiBlast_PDB 78.2630% -82 - C1 -1WDT - ? -
4 PsiBlast_PDB 75.4055% 84 - C- -1JQM - EFG_THETH -