@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Wbm0361: (2015-11-30 )
MKLNEIRERFIKFFVRNNHKQVFSSPLIPEHDPTLMFTNAGMVQFKNIFTGIQKTDIKRAVSSQKCLRVGGKHNDLENVGYTTRHHTFFEMLGNFSFGDYFKETAIEFAWKFITEELSLDKNRLSITIYHTDDKSYEIWRKVSGFSNDKIIRIATDDNFWSMGNIGPCGPCSEIFYDYAKPNLQNDDRIVEIWNLVFMEFNKDEEGNLQKLPKKCIDTGMGLERVAAVMQNVYDNYDIDLFSALISKSQEYCGNVENKAAHKIIADHLRAAAFLIAEGVLPGNEGRNYILRRLIRRAVRYIHQLGYNDPLLHRIFPVLIDSTSSAYMGGVYPELIRAKSLIETTLKSEEENFKDTLIKGINLLKKFTTDLKPGDTLSGESAFKLYDTYGFPLDITLDILKERKINFDQKGFDNAMEEQKERARAKWTGSGEKSIEQIWFNLIDKFGKTEFVGYEFSEVKDAKVLVILSSKNEVIDSAKEGEKITIILDKTPFYGESGGQVGDTGSFIIPSITPVLDTKIQKKNDRSCDRITEGIAIVENTNKVNDLYLHRCIVKSGSICKDDIVTASTDKERRQNLRRNHSATHLLHFALRKILGDHVTQKGSLIAPDRLRFDFSHNTQVTRDQLSLIEDMVNSLIRENLSAFTKIQSMNQAIGEGAMALFGKKYGDQVRVVNIGDSKELCGGTHVERTGEIGLFKIITECSIASGVRRIEALTGQEAIDYARDNEINLRKIAELVKAPVNEITSRLSILNQERKESETKIKSLYKKLVSAENIKSIEINGMNFVSHSFTDIPANIVREFTLQQQKPKTVIAFTAMEKNKTVLIVKVSKDLVDKISTKELVSTVTGGVCGENAELTQTGCDSSDIFTAIYSYLTR

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

5AL_A_2(3HXY)
SYA_ECOLI
[Raw transfer]




A5A_A_2(3HXU)
SYA_ECOLI
[Raw transfer]




SSA_A_2(3HXW)
SYA_ECOLI
[Raw transfer]




SSA_A_3(3HY1)
SYA_ECOLI
[Raw transfer]




A5A_A_2(2ZTG)
SYA_ARCFU
[Raw transfer]




G5A_B_7(3HY0)
SYA_ECOLI
[Raw transfer]




G5A_A_3(3HY0)
SYA_ECOLI
[Raw transfer]




G5A_A_4(3HXV)
SYA_ECOLI
[Raw transfer]




G5A_A_3(3HY0)
SYA_ECOLI
[Raw transfer]




ACP_A_2(3HXX)
SYA_ECOLI
[Raw transfer]




ATP_B_10(1YFR)
SYA_AQUAE
[Raw transfer]




ATP_A_9(1YFR)
SYA_AQUAE
[Raw transfer]




ALA_D_4(1YFS)
SYA_AQUAE
[Raw transfer]




GLY_B_2(1YFT)
SYA_AQUAE
[Raw transfer]




SER_B_2(1YGB)
SYA_AQUAE
[Raw transfer]




ALA_C_3(1YFS)
SYA_AQUAE
[Raw transfer]




ALA_C_3(1YFS)
SYA_AQUAE
[Raw transfer]




32 HHSearch 91.4654% -91 - C1 -3HY0 5.7 SYA_ECOLI
1 PsiBlast_PDB 90.9652% -95 - C1 -3HXU 8.9 SYA_ECOLI
28 HHSearch 90.9025% -75 * C1 *3WQY - SYA_ARCFU -
6 PsiBlast_PDB 90.4552% -94 - C1 -3HXZ - SYA_ECOLI -
22 PsiBlast_CBE 90.4452% -95 - C1 -3HY0 5.8 SYA_ECOLI
7 PsiBlast_PDB 90.3052% -96 - C1 -3HY0 5.7 SYA_ECOLI
2 PsiBlast_PDB 90.2652% -95 - C1 -3HXV 5.8 SYA_ECOLI
3 PsiBlast_PDB 90.1652% -95 - C1 -3HXW 8.7 SYA_ECOLI
23 PsiBlast_CBE 90.0452% -95 - C1 -3HXZ - SYA_ECOLI -
24 PsiBlast_CBE 89.9452% -95 - C1 -3HXZ - SYA_ECOLI -
25 PsiBlast_CBE 89.9352% -94 - C1 -3HXZ - SYA_ECOLI -
5 PsiBlast_PDB 89.8152% -96 - C1 -3HXY 9.0 SYA_ECOLI
8 PsiBlast_PDB 89.6452% -94 - C1 -3HY1 7.6 SYA_ECOLI
4 PsiBlast_PDB 89.4952% -93 - C1 -3HXX 10.1 SYA_ECOLI
11 PsiBlast_PDB 87.8947% -93 - C1 -1YFT 3.1 SYA_AQUAE
21 PsiBlast_CBE 87.5852% -92 - C1 -3HY1 - SYA_ECOLI -
13 PsiBlast_PDB 87.5147% -91 - C1 -3HTZ - SYA_AQUAE -
10 PsiBlast_PDB 86.9647% -91 - C1 -1YFS 2.6 SYA_AQUAE
26 PsiBlast_CBE 86.7847% -90 - C1 -1YFS 2.5 SYA_AQUAE
30 HHSearch 86.6927% -71 - C1 -2ZTG - SYA_ARCFU -
9 PsiBlast_PDB 86.4747% -91 - C1 -1YFR 2.9 SYA_AQUAE
31 HHSearch 86.4448% -85 - C1 -1YFS 2.6 SYA_AQUAE
27 PsiBlast_CBE 86.0347% -86 - C1 -1YFR 5.3 SYA_AQUAE
12 PsiBlast_PDB 85.7147% -93 - C1 -1YGB 3.5 SYA_AQUAE