@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Wbm0405: (2015-12-01 )
MQDNIVPISIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSKAGYDAGKPYKKAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLIDGQGNFGSVDGDPPASMRYTEARLQGVSHFLLNDIDENTVDFRPNYDGNESEPVVLPAEFPNLLVNGASGVAVGMATNIPPHNLGEIIDACVLYIDNHEVTLDELLKVVPGPDFPTGGTILGRSGIRSAFATGRGSIVIQGKTHIEDLPQDRQAIVIDEIPYQVNKVKLIEKIGELVKEEKINGITEIRDESDKSGIRVVIDLRKNAAADFILNQILGLTPLRSSFSVNTLVLNNNRPVLMSLKEIIVAFVDFRKEVLIRRTEFRLRKTREKAHIYIGLYIAVLSIDEVIKIVRGTKDPEEANKKLLNKEWKTSAEINTIIGLISDSMSFLKDGVYRLTELQTKAILDIKLQRLTGLERDKLEAELNSMVNLVKEYIAFLGSEEKLMKEIKNNLQEVRNRFAVPRKTVIEESDADIEVEDLIPQEDMVVTVTMNGYIKRVKLSHYRTQRRGGKGKLGQGLKEEDVITKLFVGNTHTSLLFFSNIGRVYRLKVYKLPLAEPTARGRALVNIFPLADGETITNIMPLPSESDESQNIVFATAHGNIRRNSLADFHYIPSNGKIAIKLDEGDKLVSVKVCNETDHVLLSTMLGKSIRFIVSDVRQFKSRNSDGVRGIKLAKNDSVISMTILNGIGVTTETKELYLKVPLAKRLETAVNNSIDSKLEKVLNDLGIDNKLFLKLAANEEFILTITENGFGKRTSAYEYRVTNRGGIGITNILTTNRNGNVVASFPVEQDDNIMLITDKGKLIRISVNGIRIAGRSTQGVTLFKTESREKVVSAAKIEDPGSTEENMPEIGDSASS

Atome Classification :

(42 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_E_5(3RAD)
PARC_STRPN
[Raw transfer]

-

GOL_A_4(3ILW)
GYRA_MYCTU
[Raw transfer]




SM8_B_8(2Y3P)
GYRA_ECOLI
[Raw transfer]




GOL_A_4(3ILW)
GYRA_MYCTU
[Raw transfer]




SM8_A_5(2Y3P)
GYRA_ECOLI
[Raw transfer]




NACID_H_8(3RAE)
PARC_STRPN
[Raw transfer]

-

GOL_B_8(3ILW)
GYRA_MYCTU
[Raw transfer]




CHAIN_H_8(4KOE)
PARC_STRPN
[Raw transfer]

-

CHAIN_H_8(4KPE)
PARC_STRPN
[Raw transfer]

-

NACID_H_8(3K9F)
PARC_STRPN
[Raw transfer]

-

NACID_H_8(3RAD)
PARC_STRPN
[Raw transfer]

-

CHAIN_H_8(4KPF)
PARC_STRPN
[Raw transfer]

-

MPD_B_5(3IFZ)
GYRA_MYCTU
[Raw transfer]




MPD_A_3(3IFZ)
GYRA_MYCTU
[Raw transfer]




MFX_H_10(3FOF)
PARC_STRPN
[Raw transfer]




NACID_H_6(4I3H)
?
[Raw transfer]

-

NACID_F_6(3RAE)
PARC_STRPN
[Raw transfer]

-

CHAIN_E_5(4KOE)
PARC_STRPN
[Raw transfer]

-

NACID_F_6(3K9F)
PARC_STRPN
[Raw transfer]

-

CHAIN_F_6(4KPE)
PARC_STRPN
[Raw transfer]

-

NACID_F_4(2XCR)
GYRA_STAAN
[Raw transfer]

-

NACID_E_3(2XCR)
GYRA_STAAN
[Raw transfer]

-

NACID_E_5(3LTN)
PARC_STRPN
[Raw transfer]

-

NACID_F_4(2XCR)
GYRA_STAAN
[Raw transfer]

-

NACID_E_5(3KSA)
PARC_STRPN
[Raw transfer]

-

NACID_F_6(3RAD)
PARC_STRPN
[Raw transfer]

-

NACID_G_7(3RAF)
PARC_STRPN
[Raw transfer]

-

CHAIN_F_6(4KPF)
PARC_STRPN
[Raw transfer]

-

NACID_E_5(3RAF)
PARC_STRPN
[Raw transfer]

-

NACID_G_5(4I3H)
?
[Raw transfer]

-

NACID_G_7(3LTN)
PARC_STRPN
[Raw transfer]

-

NACID_F_6(3KSB)
PARC_STRPN
[Raw transfer]

-

NACID_W_8(2XCR)
GYRA_STAAN
[Raw transfer]

-

NACID_G_7(3KSA)
PARC_STRPN
[Raw transfer]

-

NACID_W_8(2XCR)
GYRA_STAAN
[Raw transfer]

-

NACID_E_5(3KSB)
PARC_STRPN
[Raw transfer]

-

NACID_E_5(3FOF)
PARC_STRPN
[Raw transfer]

-

NACID_E_5(3FOE)
PARC_STRPN
[Raw transfer]

-

67 HHSearch 93.9235% -94 - C3 -1ZVU - PARC_ECOLI -
23 PsiBlast_CBE 92.3350%-102 - C2 -2Y3P 4.3 GYRA_ECOLI (first)
2 PsiBlast_PDB 91.6450%-101 - C2 -2Y3P 4.6 GYRA_ECOLI (first)
3 PsiBlast_PDB 90.9350% -99 - C2 -4TMA - ? -
24 PsiBlast_CBE 90.2750% -98 - C2 -4TMA - ? -
26 PsiBlast_CBE 89.9851% -91 - C2 -2XCR 2.8 GYRA_STAAN (first)
6 PsiBlast_PDB 89.9849%-100 - C2 -1AB4 - GYRA_ECOLI -
30 PsiBlast_CBE 89.1539% -97 - C2 -4I3H 5.2 ?
25 PsiBlast_CBE 89.0751% -96 - C2 -2XCR 4.0 GYRA_STAAN (first)
4 PsiBlast_PDB 88.9551% -94 - C2 -2XCR 5.5 GYRA_STAAN (first)
1 PsiBlast_PDB 88.7751% -91 - C2 -4DDQ - GYRA_BACSU -
27 PsiBlast_CBE 88.6351% -91 - C2 -2XCR 5.3 GYRA_STAAN (first)
22 PsiBlast_CBE 88.5051% -93 - C2 -4DDQ - GYRA_BACSU -
9 PsiBlast_PDB 88.2139% -96 - C2 -4I3H 5.4 ?
21 PsiBlast_CBE 87.9151% -96 - C2 -4DDQ - GYRA_BACSU -
28 PsiBlast_CBE 85.4444% -96 - C2 -3IFZ 3.2 GYRA_MYCTU
7 PsiBlast_PDB 85.1544% -96 - C2 -3IFZ 3.1 GYRA_MYCTU
19 PsiBlast_PDB 85.0739% -94 - C2 -4KOE 6.0 PARC_STRPN
32 PsiBlast_CBE 85.0239% -96 - C2 -4KPF 3.7 PARC_STRPN
71 HHSearch 84.7646% -95 * C2 *3ILW 2.8 GYRA_MYCTU
34 PsiBlast_CBE 84.5139% -93 - C2 -4KOE 4.2 PARC_STRPN
17 PsiBlast_PDB 84.4439% -94 - C2 -3RAD 4.0 PARC_STRPN
36 PsiBlast_CBE 84.3739% -95 - C2 -3RAE 3.1 PARC_STRPN
20 PsiBlast_PDB 84.2139% -95 - C2 -4KPE 3.9 PARC_STRPN
18 PsiBlast_PDB 84.2139% -94 - C2 -3RAE 3.2 PARC_STRPN
29 PsiBlast_CBE 84.0543% -94 - C2 -3ILW 2.5 GYRA_MYCTU
35 PsiBlast_CBE 83.9939% -94 - C2 -3RAF 5.6 PARC_STRPN
40 PsiBlast_CBE 83.9839% -97 - C2 -3KSA 4.5 PARC_STRPN
8 PsiBlast_PDB 83.9743% -96 - C2 -3ILW 2.8 GYRA_MYCTU
13 PsiBlast_PDB 83.9339% -97 - C2 -3KSA 4.2 PARC_STRPN
16 PsiBlast_PDB 83.9039% -91 - C2 -3RAF 6.2 PARC_STRPN
33 PsiBlast_CBE 83.7139% -91 - C2 -4KPE 4.0 PARC_STRPN
39 PsiBlast_CBE 83.6839% -98 - C2 -3KSB 5.5 PARC_STRPN
12 PsiBlast_PDB 83.6539% -91 - C2 -3K9F 3.1 PARC_STRPN
37 PsiBlast_CBE 83.6139% -94 - C2 -3RAD 3.8 PARC_STRPN
14 PsiBlast_PDB 83.6039% -97 - C2 -3KSB 5.6 PARC_STRPN
41 PsiBlast_CBE 83.5339% -91 - C2 -3K9F 3.9 PARC_STRPN
38 PsiBlast_CBE 83.1939% -94 - C2 -3LTN 4.5 PARC_STRPN
15 PsiBlast_PDB 83.1839% -94 - C2 -3LTN 5.2 PARC_STRPN
31 PsiBlast_CBE 82.7939% -93 - C2 -4KPF 4.4 PARC_STRPN
11 PsiBlast_PDB 77.8639% -92 - C2 -3FOF 4.5 PARC_STRPN
10 PsiBlast_PDB 77.0939% -89 - C2 -3FOE Error PARC_STRPN