@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Wbm0448: (2015-12-01 )
MNKSAYEIVEHEYDVVVVGAGGAGLRATLGMAATNFSVACISKIFPTRSHTVAAQGGISAALGNIAEDDWRWHAYDTIKGSDWLGDQDAIEYMCKNAAKAVIELENFGVPFSRTGNGKIYQRPFGGMTTHFGKGKSAQRTCAAADKTGHAILHTLYQQCLKFNTEFFVEYFVIDLIIDNETGACCGVLAWSLCEGTLHKFRAHSVVLATGGYGRVYFSATSAHTCTGDGNGMVVRAGLPLEDMEFVQFHPTGIYGSGCLMTEGCRGEGGYLVNSQGERFMERYAPKVKDLASRDVVSRAITIEIREGRGVGPKKDHIYLTIAHLDPEIIKLRLPGISETARTFAGVDVTKDPIPVIPTVHYNMGGIPTNYHGEVVTLKESKEEVVEGLFAIGEAACISVHGANRLGSNSLLDLVVFGRAAALRAKKKLKPNMPHKKLNSACIDWIVDRFNKMRFASGGLRVSKIRSEMQHTMQKYASVFRVAEVLEEGKRAIKGVAKMMPDIAIEDRSMVWNSDLVEALELANMIPQAVITMECAANREESRGAHAREDFPERDDKNWMKHTIAWLEEKEGQINTRIDYKKVAENTLSDEIDFIAPEKRVY

Atome Classification :

(35 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_A_5(3AE8)
SDHA_PIG
[Raw transfer]




FAD_A_5(3AEB)
SDHA_PIG
[Raw transfer]




FAD_A_5(3AEC)
SDHA_PIG
[Raw transfer]




FAD_A_5(3AEE)
SDHA_PIG
[Raw transfer]




FAD_A_5(3AED)
SDHA_PIG
[Raw transfer]




FAD_A_6(1YQ3)
SDHA_CHICK
[Raw transfer]




FAD_A_5(3AE2)
SDHA_PIG
[Raw transfer]




FAD_A_6(1YQ4)
SDHA_CHICK
[Raw transfer]




FAD_A_5(3AE6)
SDHA_PIG
[Raw transfer]




FAD_A_5(3SFE)
SDHA_PIG
[Raw transfer]




FAD_A_5(3ABV)
SDHA_PIG
[Raw transfer]




FAD_A_5(3AE7)
SDHA_PIG
[Raw transfer]




FAD_A_5(3AE9)
SDHA_PIG
[Raw transfer]




FAD_A_5(3AE5)
SDHA_PIG
[Raw transfer]




FAD_A_8(1NEK)
SDHA_ECOLI
[Raw transfer]




FAD_A_5(3AE3)
SDHA_PIG
[Raw transfer]




FAD_A_5(4YTP)
?
[Raw transfer]




FAD_A_5(3AE1)
SDHA_PIG
[Raw transfer]




FAD_A_5(1ZOY)
SDHA_PIG
[Raw transfer]




FAD_A_5(3AEA)
SDHA_PIG
[Raw transfer]




FAD_A_5(3AEG)
SDHA_PIG
[Raw transfer]




FAD_A_5(3SFD)
SDHA_PIG
[Raw transfer]




FAD_A_5(3AEF)
SDHA_PIG
[Raw transfer]




FAD_A_6(2H89)
SDHA_CHICK
[Raw transfer]




FAD_A_8(1NEN)
SDHA_ECOLI
[Raw transfer]




FAD_A_5(3AE4)
SDHA_PIG
[Raw transfer]




FAD_A_5(1ZP0)
SDHA_PIG
[Raw transfer]




FAD_A_6(2ACZ)
SDHA_ECOLI
[Raw transfer]




3NP_A_10(1ZP0)
SDHA_PIG
[Raw transfer]




FUM_A_15(1JRX)
FRDA_SHEFR
[Raw transfer]




3NP_A_11(1YQ4)
SDHA_CHICK
[Raw transfer]




102 HHSearch 84.6060% -89 * C2 *2H88 - SDHA_CHICK -
43 PsiBlast_CBE 84.1856% -90 - C2 -4YSY - ? -
53 PsiBlast_CBE 84.1756% -91 - C2 -3VR8 - ? -
20 PsiBlast_PDB 84.1758% -90 - C2 -3AEB 12.4 SDHA_PIG
24 PsiBlast_CBE 84.1158% -89 - C2 -3SFE 12.3 SDHA_PIG
26 PsiBlast_CBE 84.0958% -90 - C2 -3AEG 12.8 SDHA_PIG
48 PsiBlast_CBE 84.0756% -90 - C2 -3VRA - ? -
25 PsiBlast_CBE 84.0658% -90 - C2 -3SFD 12.0 SDHA_PIG
11 PsiBlast_PDB 84.0258% -89 - C2 -3AE2 12.6 SDHA_PIG
8 PsiBlast_PDB 83.9758% -90 - C2 -1ZP0 11.8 SDHA_PIG
7 PsiBlast_PDB 83.9458% -89 - C2 -1ZOY 11.7 SDHA_PIG
1 PsiBlast_PDB 83.8557% -89 - C2 -1YQ3 12.3 SDHA_CHICK
31 PsiBlast_CBE 83.8458% -90 - C2 -4YTP 12.5 ?
10 PsiBlast_PDB 83.8358% -88 - C2 -3AE1 12.0 SDHA_PIG
22 PsiBlast_CBE 83.7757% -89 - C2 -2H88 - SDHA_CHICK -
5 PsiBlast_PDB 83.7357% -89 - C2 -2H89 12.1 SDHA_CHICK
16 PsiBlast_PDB 83.6958% -88 - C2 -3AE7 10.0 SDHA_PIG
39 PsiBlast_CBE 83.6456% -88 - C2 -4YT0 - ? -
42 PsiBlast_CBE 83.5956% -88 - C2 -4YSY - ? -
2 PsiBlast_PDB 83.5857% -87 - C2 -1YQ4 10.9 SDHA_CHICK
28 PsiBlast_CBE 83.5358% -88 - C2 -3AEE 11.7 SDHA_PIG
17 PsiBlast_PDB 83.5158% -87 - C2 -3AE8 10.5 SDHA_PIG
13 PsiBlast_PDB 83.4658% -88 - C2 -3AE4 11.0 SDHA_PIG
9 PsiBlast_PDB 83.4558% -88 - C2 -3ABV 12.1 SDHA_PIG
14 PsiBlast_PDB 83.3258% -88 - C2 -3AE5 11.2 SDHA_PIG
12 PsiBlast_PDB 83.3058% -87 - C2 -3AE3 10.9 SDHA_PIG
19 PsiBlast_PDB 83.2458% -88 - C2 -3AEA 10.9 SDHA_PIG
29 PsiBlast_CBE 83.1958% -88 - C2 -3AED 11.1 SDHA_PIG
30 PsiBlast_CBE 83.0958% -89 - C2 -3AEC 10.1 SDHA_PIG
15 PsiBlast_PDB 83.0658% -89 - C2 -3AE6 11.0 SDHA_PIG
27 PsiBlast_CBE 83.0058% -85 - C2 -3AEF 11.6 SDHA_PIG
18 PsiBlast_PDB 82.7858% -85 - C2 -3AE9 11.6 SDHA_PIG
76 PsiBlast_CBE 78.3053% -83 - C2 -1NEN 11.8 SDHA_ECOLI
75 PsiBlast_CBE 77.8253% -81 - C2 -2ACZ 11.4 SDHA_ECOLI
77 PsiBlast_CBE 77.5753% -83 - C2 -1NEK 11.6 SDHA_ECOLI