@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Wbm0453: (2015-12-01 )
MPNIVTRFAPSPTGFLHIGGARTALFNWLYAKHHGGRFLLRIEDTDRKRSTQEAIDAIINGLKWLGVSYDGEIVYQSKRIERHIEVANLLVEKGKAYCCCCPEDKVAEKKAKAREERKIYKHKCTSVIPDAKPVVRFNVPDSQEIIVDDKIYGHIKVNSDQLDDMVILRSDNTPTYIFAVVVDDHDAGITDIIRGSDHLTNTFKQVLIYQALDFDIPRFAHVPLIHGRDGNKLSKRHGATSVCDYEKMGILPKAMRNYLLRLGWSHGNDEIISNEQAVKWFNLESIGRSPARLNFKKLEHLNNHYINNMSNEDILTLMLGESTLTNKKKNYLLQGLTELKKRANYLTELLDLAQFYIKDPPFDLSEEAEQVVKSNLDIIKLLASFLSNIGDKNWNKGFLSSQVKEFSKLHSAKISDIYHSLRAPITGVMDAPGIIDIMIILGKDECIRRLQAV

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GSU_A_2(3AFH)
SYE2_THEMA
[Raw transfer]




GSU_A_2(3AFH)
SYE2_THEMA
[Raw transfer]




GLU_A_4(4GRI)
SYE_BORBU
[Raw transfer]




GLU_B_7(4GRI)
SYE_BORBU
[Raw transfer]




GLU_B_2(2CUZ)
SYE_THET8
[Raw transfer]




GLU_A_2(4A91)
GLUQ_ECOLI
[Raw transfer]




GLU_A_3(1J09)
SYE_THET8
[Raw transfer]




GLU_A_3(1J09)
SYE_THET8
[Raw transfer]




GLU_A_3(2CFO)
SYE_THEEB
[Raw transfer]




GLU_A_3(2CFO)
SYE_THEEB
[Raw transfer]




1 PsiBlast_PDB 90.7035%-104 - C3 -2O5R - SYE1_THEMA -
24 PsiBlast_CBE 90.6133%-100 - C3 -2DXI - SYE_THET8 -
26 PsiBlast_CBE 90.6033% -98 - C3 -2CV1 - SYE_THET8 -
13 PsiBlast_PDB 90.5633% -96 - C3 -2CV0 - SYE_THET8 -
15 PsiBlast_PDB 90.3233% -97 - C3 -2CV2 - SYE_THET8 -
28 PsiBlast_CBE 90.2333% -97 - C3 -1N78 - SYE_THET8 -
6 PsiBlast_PDB 90.2333% -96 - C3 -1G59 - SYE_THET8 -
25 PsiBlast_CBE 90.0333%-101 - C3 -2CV2 - SYE_THET8 -
14 PsiBlast_PDB 90.0333% -97 - C3 -2CV1 - SYE_THET8 -
16 PsiBlast_PDB 89.9233% -97 - C3 -2DXI - SYE_THET8 -
11 PsiBlast_PDB 89.8433% -97 - C3 -1N78 - SYE_THET8 -
29 PsiBlast_CBE 89.8033% -96 - C3 -1N77 - SYE_THET8 -
27 PsiBlast_CBE 89.7933% -98 - C3 -2CV0 - SYE_THET8 -
10 PsiBlast_PDB 89.5533% -95 - C3 -1N77 - SYE_THET8 -
9 PsiBlast_PDB 89.4633% -96 - C3 -1N75 - SYE_THET8 -
8 PsiBlast_PDB 89.2333% -96 - C3 -1J09 2.9 SYE_THET8
12 PsiBlast_PDB 89.0133% -97 - C3 -2CUZ 2.3 SYE_THET8
7 PsiBlast_PDB 88.8933% -95 - C3 -1GLN - SYE_THET8 -
2 PsiBlast_PDB 88.7437% -87 - C3 -2CFO 3.0 SYE_THEEB
55 HHSearch 88.3233% -97 - C3 -3AFH 8.2 SYE2_THEMA
52 HHSearch 88.2436% -93 - C3 -2CFO 3.0 SYE_THEEB
5 PsiBlast_PDB 88.0333% -99 - C3 -3AFH 8.2 SYE2_THEMA
53 HHSearch 87.9333% -94 * C3 *1J09 2.9 SYE_THET8
17 PsiBlast_PDB 87.2934%-101 - C3 -4GRI 3.5 SYE_BORBU
30 PsiBlast_CBE 87.0834% -98 - C3 -4GRI 3.5 SYE_BORBU
31 PsiBlast_CBE 62.6132% -90 - C3 -4A91 4.4 GLUQ_ECOLI