@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Wbm0455: (2015-12-01 )
MTEKKYNKILIANRGEIACRIIKTARRMGISCVCVYSDADINSVHVRQADESKYIGPSPSCLSYLNIEKICEVAVETGVQAVHPGYGFLAENPDFPYALQKYNIDFIGPSAETIEVTANKITAKKAARKAGVNIVPGYMGKINDAAHAAQVAEEIGFPVMLKAASGGGGKGMRIVNSKKEIELAFTSAKNEAEKSFKDGSIFIEKYIELPRHIEIQIIADKYGNVVCLGERECSVQRNNQKIIEETPSPFISEKVRQEMYAQCVSLAKQAGYFSAGTIEFVADKDQNFYFLEVNTRLQVEHPVTEFVTGIDIVEEMIRTSCGEKLRFGQDDIRLTGSAIESRTCAEDPSKRFFPSSGRIKYYDKPNENDHVRVDDGVAAGSEISMFYDSMIAKVITYGKDRIEAISRMQKALSECYIGGVTNNIEFLESIFHHPNFVAAKLHTRFTLDHYPSGFHGDFVTEEYIKIFIFAGLYVHLENKEKYYDKPIDEVFVARINDNEHLVNAKYQDNILTTIYNHNTYSVSGKWKSSYRLLCITINDDTNMTFKVEKQGSKYFIRHAGMQAECYIFKPHVAELSKLMLNNETEKASVDAVKSPISGLLVKLHVNVGDQVETGQPLFVVEAMKMENIICAEAEMVIKNVLVQEGKNVQIGDVVLVLLS

Atome Classification :

(33 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_3(2VPQ)
?
[Raw transfer]




ANP_B_7(2VPQ)
?
[Raw transfer]




ANP_A_3(2VPQ)
?
[Raw transfer]




ADP_A_8(3OUZ)
?
[Raw transfer]




ADP_A_4(3RV3)
ACCC_ECOLI
[Raw transfer]




ADP_A_2(3RV4)
ACCC_ECOLI
[Raw transfer]




ADP_A_4(3RUP)
ACCC_ECOLI
[Raw transfer]




AP2_A_2(2VQD)
ACCC_PSEAE
[Raw transfer]




ADP_B_7(3G8C)
ACCC_ECOLI
[Raw transfer]




ATF_A_4(2VR1)
ACCC_ECOLI
[Raw transfer]




ADP_A_3(3G8C)
ACCC_ECOLI
[Raw transfer]




ATP_B_4(1DV2)
ACCC_ECOLI
[Raw transfer]




ADP_B_4(3G8D)
ACCC_ECOLI
[Raw transfer]




GOL_A_5(3VA7)
?
[Raw transfer]




ADP_B_9(3RUP)
ACCC_ECOLI
[Raw transfer]




ADP_B_7(3RV3)
ACCC_ECOLI
[Raw transfer]




ADP_A_3(3RV3)
ACCC_ECOLI
[Raw transfer]




LZK_B_4(2V59)
ACCC_ECOLI
[Raw transfer]




Y7Y_A_2(4RZQ)
ACCC_HAEIN
[Raw transfer]




21 PsiBlast_CBE 93.0843% -99 - C3 -3N6R - ? -
22 PsiBlast_CBE 92.3743% -98 - C3 -3N6R - ? -
23 PsiBlast_CBE 92.3243%-100 - C3 -3N6R - ? -
1 PsiBlast_PDB 90.3143% -95 - C3 -3N6R - ? -
25 PsiBlast_CBE 90.2943% -96 - C3 -3N6R - ? -
24 PsiBlast_CBE 90.2143% -95 - C3 -3N6R - ? -
113 Fugue 89.8942% -94 - C3 -3N6R - ? -
2 PsiBlast_PDB 85.2437% -82 - C3 -3U9S - ? -
124 HHSearch 84.6444% -83 - C3 -3N6R - ? -
123 HHSearch 80.9837% -75 - C3 -3U9T - ? -
131 HHSearch 80.9744% -82 - C3 -3OUZ 7.3 ?
115 Fugue 80.7334% -68 - C3 -3VA7 2.1 ?
27 PsiBlast_CBE 80.2646% -83 - C3 -2VPQ 5.9 ?
129 HHSearch 79.9245% -76 - C3 -2VPQ 6.3 ?
3 PsiBlast_PDB 79.8337% -74 - C3 -3U9T - ? -
8 PsiBlast_PDB 79.7846% -81 - C3 -2VPQ 6.3 ?
19 PsiBlast_PDB 79.4841% -86 - C3 -2DZD - ? -
114 Fugue 78.5735% -67 - C3 -3U9T - ? -
133 HHSearch 78.5345% -78 - C3 -1ULZ - ? -
7 PsiBlast_PDB 78.4045% -82 - C3 -1ULZ - ? -
4 PsiBlast_PDB 77.9846% -77 - C3 -2VQD 6.9 ACCC_PSEAE
6 PsiBlast_PDB 77.6247% -88 - C3 -4RZQ 3.6 ACCC_HAEIN
96 PsiBlast_CBE 77.0243% -81 - C3 -3RV4 7.1 ACCC_ECOLI
90 PsiBlast_CBE 76.9543% -82 - C3 -3G8C 6.0 ACCC_ECOLI
88 PsiBlast_CBE 76.8843% -82 - C3 -3RUP 6.9 ACCC_ECOLI
89 PsiBlast_CBE 76.7143% -80 - C3 -3RUP 8.0 ACCC_ECOLI
86 PsiBlast_CBE 76.4943% -83 - C3 -3RV3 6.3 ACCC_ECOLI
94 PsiBlast_CBE 76.4343% -83 - C3 -3G8D 5.0 ACCC_ECOLI
87 PsiBlast_CBE 76.4343% -83 - C3 -3RV3 7.9 ACCC_ECOLI
91 PsiBlast_CBE 76.4243% -82 - C3 -3G8C 5.8 ACCC_ECOLI
75 PsiBlast_CBE 76.0643% -84 - C3 -2VR1 4.1 ACCC_ECOLI
92 PsiBlast_CBE 75.7143% -80 - C3 -1DV2 4.0 ACCC_ECOLI
78 PsiBlast_CBE 75.6943% -81 - C3 -2V59 5.2 ACCC_ECOLI