@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Wbm0464: (2015-12-01 )
MHDIEYIRQNSEEFEKAMESRGMKEFSAEEILKVDHKKRLLTTKLQDLNRQRNEITKKIKELKMSKSPCEKQIKSSKNITNEIEAISLKEQMEKDKLVNILSNLPNIPVQGVPIGAGENSNLEVRRYREKRQFDFVPKSHYELGERLGLMDFEQAAKISGSRFAILKGQLAKLGRALINFMLEMHVNEFGYTEVYHPVLVKNEAMYNVGQLPKFSDDSYLTTDELRLIPTGEVVLTNSVADKIVEEKKLPIRFTAYSECFRKEAGSAGQSTRGMIRQHQFGKVELVSITTEDQSNDELERMTGVAEEILKRLELPYRVILLCSGDMGFAAQKTYDIEVWLPEQNRYREISSCSNCGNFQARRMNAKYSLEANKKVKKYVHTLNGSALAIGRTIIAVMENYQNPDGSITIPNVLQKYISNGTVISK

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SSA_A_3(2DQ3)
SYS_AQUAE
[Raw transfer]




SSA_A_3(2DQ3)
SYS_AQUAE
[Raw transfer]




SSA_D_4(1SET)
SYS_THET2
[Raw transfer]




SSA_A_7(2DQ0)
SYS_PYRHO
[Raw transfer]




AHX_C_3(1SES)
SYS_THET2
[Raw transfer]




ATP_A_3(3LSS)
?
[Raw transfer]




ATP_B_7(3LSS)
?
[Raw transfer]




AMP_A_3(3ERR)
DYHC1_MOUSE
[Raw transfer]




1 PsiBlast_PDB 87.7047% -66 - C1 -2DQ3 6.5 SYS_AQUAE
27 HHSearch 87.4447% -67 - C1 -2DQ3 6.5 SYS_AQUAE
30 HHSearch 83.9338% -65 - C1 -2DQ0 6.4 SYS_PYRHO
3 PsiBlast_PDB 83.1038% -65 - C1 -2ZR2 - SYS_PYRHO -
2 PsiBlast_PDB 83.0738% -65 - C1 -2DQ0 - SYS_PYRHO -
4 PsiBlast_PDB 82.7738% -61 - C1 -2ZR3 - SYS_PYRHO -
21 PsiBlast_CBE 82.5238% -64 - C1 -2ZR2 - SYS_PYRHO -
22 PsiBlast_CBE 81.6438% -66 - C1 -2DQ0 - SYS_PYRHO -
32 HHSearch 78.2833% -62 - C1 -3QNE - SYSC_CANAL -
28 HHSearch 77.9032% -63 - C1 -3LSS 5.8 ?
29 HHSearch 77.4533% -61 - C1 -1SES 5.9 SYS_THET2
15 PsiBlast_PDB 76.5030% -71 - C1 -3VBB - SYSC_HUMAN -
31 HHSearch 76.4431% -67 - C1 -3VBB - SYSC_HUMAN -
11 PsiBlast_PDB 76.3334% -69 - C1 -3QNE - SYSC_CANAL -
13 PsiBlast_PDB 76.1034% -70 - C1 -3QO8 - SYSC_CANAL -
12 PsiBlast_PDB 76.0634% -68 - C1 -3QO7 - SYSC_CANAL -
48 Fugue 75.6928% -61 - C1 -1WLE - SYSM_BOVIN -
17 PsiBlast_PDB 75.4927% -63 - C1 -1WLE - SYSM_BOVIN -
10 PsiBlast_PDB 75.1034% -70 - C1 -3QO5 - SYSC_CANAL -
16 PsiBlast_PDB 74.4730% -67 - C1 -4L87 - SYSC_HUMAN -
23 PsiBlast_CBE 73.0332% -58 - C1 -1SET 6.6 SYS_THET2
33 HHSearch 67.6735% -68 - C1 -3ERR 6.0 DYHC1_MOUSE (first)
25 PsiBlast_CBE 66.7835% -67 - C1 -3LSS 5.4 ?