@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Wbm0469: (2015-12-01 )
MNINKNEFLFLPLGGVGRIGMNVNLYHYRGKWIMIDLGIGFADETMPGIELLIADVSFIAQRKKDLLGIIITHAHEDHCGAVPYLWKELQCPIYTTKFTANFLKEKLKEFRLEGMVSVKEVDINGSINLSPFTVEFINVTHSIPEAHSILVSTDVGSALHTGDWKFDQKPIVGLTSNISRLKEIGDKGNLLAAICDSTNVLGKHNPESESEIYNNIYNIIRRSKKLVAVSLFASNVARIETIGQVAKVLGRKVVLLGRSLWRIVRVAQNSGYLTDSVEFCEVKDVADLPREKLLLICTGCQGEPMAAISKLANKSHHAFKMQQGDTVIFSSKIIPGNETRAHVIFNAFIEMGVEIVTEKTECVHASGHPVKAELREMYSLIKPKMSIPVHGEYIHTHAHVKFAKECGVEKAIMIAPGDIVNLENGKKVDSINVNYFGVDGILLRHPGSNVIRMRKKMRDAGTIVVTAIVNKRNKLLAKPKVFAPGVLEAVEDAAIIQRIIKAVESAFNLQSTKKVRNKIESLIFSILKEYLLKRPIIEVQIEQV

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

U5P_A_5(3BK2)
RNJ_THET2
[Raw transfer]



U5P_A_5(3BK2)
RNJ_THET2
[Raw transfer]



C5P_B_9(5A0V)
?
[Raw transfer]



NACID_E_3(5A0V)
?
[Raw transfer]
-
NACID_F_4(5A0T)
?
[Raw transfer]
-
NACID_E_3(5A0T)
?
[Raw transfer]
-
NACID_F_4(5A0V)
?
[Raw transfer]
-
CHAIN_B_2(3T3O)
RNJ_THET2
[Raw transfer]
-
CHAIN_B_2(3T3N)
RNJ_THET2
[Raw transfer]
-
63 HHSearch 93.1430%-115 - C1 -3BK2 4.3 RNJ_THET2
7 PsiBlast_PDB 91.6032%-106 - C1 -3BK2 4.3 RNJ_THET2
4 PsiBlast_PDB 91.5132%-118 - C1 -3T3N 8.9 RNJ_THET2
5 PsiBlast_PDB 91.2232%-117 - C1 -3T3O 9.1 RNJ_THET2
6 PsiBlast_PDB 90.3032%-106 - C1 -3BK1 - RNJ_THET2 -
3 PsiBlast_PDB 89.2431%-113 - C1 -3ZQ4 - RNJ1_BACSU -
24 PsiBlast_CBE 89.1531%-116 - C1 -3ZQ4 - RNJ1_BACSU -
23 PsiBlast_CBE 89.1431%-115 - C1 -3ZQ4 - RNJ1_BACSU -
25 PsiBlast_CBE 87.8231%-114 - C1 -3ZQ4 - RNJ1_BACSU -
21 PsiBlast_CBE 83.9933%-110 - C1 -5A0V 10.7 ?
1 PsiBlast_PDB 83.5633%-109 * C1 *5A0T 11.2 ?
2 PsiBlast_PDB 83.5133%-108 - C1 -5A0V 10.5 ?
22 PsiBlast_CBE 83.1433%-109 - C1 -5A0T 11.5 ?
64 HHSearch 61.5419%-102 - C1 -3IEK - RNSE_THET8 -
66 HHSearch 58.2021% -94 - C1 -3AF5 - ? -
65 HHSearch 57.0519% -89 - C1 -2AZ4 - ? -
69 HHSearch 56.8817% -94 - C1 -2YCB - ? -
67 HHSearch 54.4017% -94 - C1 -2I7T - CPSF3_HUMAN -
85 Fugue 51.1218% -74 - C1 -2AZ4 - ? -
87 Fugue 48.1522% -68 - C1 -5AHR - -