@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Wbm0472: (2015-12-01 )
MIRITFLAKQKVEEYSSRVTGFDILQPDISKEAIALRVNGELYDLSREIESDTEIDVIQLNDEEGLDIIRHDAAHIMAQAVKELFPNAQVTIGPTIQDGFYYDFAIDHTFTTDDLAAIEKKMKEIIKSNHRFIREVWARKQAINFFSSIGEKYKVDIISSIPESEDLTVYRQGDFVDLCRGPHSPSTSRVKAFKLMKVAGAYWRGNVKGPMLQRIYGTAWRNKDELNIYLKRLEEAKKRDHRRIAKDMDLFHIQEEAVGQVFWHEQGYTLYNVLESYIRKKLINNGYAEVKTPILVSKELWEKSGHWDKFRENMFIVDESESKKLAIKPMNCPCHVQIFNSYTRSYRNLPIRMAEFGMCHRNESSGSLHGLMRVRGFTQDDAHIFCMEEQVNSETVKFCALLKEVYSELGFNEISVKFSDRPNVRAGDNEVWDRAEKALLEAVKEAGLSYELNPGEGAFYGPKLEFILKDAIGRSWQCGTLQVDFILPERLGAFYIGADGQKYHPVMLHRAILGTFERFIGILIEHYAGKFPLWLAPTQLVILTVTNEADNYATEISNVLKEQGVRVKTDLTNEKVSYKIRLHSSNKVPILWIVGKNEVASKTVSVRNLGSEKQESSSCEKAVKLLLKKVLI

Atome Classification :

(29 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

409_A_4(4HWO)
SYT_ECOLI
[Raw transfer]




409_B_6(4HWO)
SYT_ECOLI
[Raw transfer]




TSB_A_3(3UH0)
SYTM_YEAST
[Raw transfer]




TSB_A_3(3UH0)
SYTM_YEAST
[Raw transfer]




SSA_A_5(1FYF)
SYT_ECOLI
[Raw transfer]




1B2_A_4(4HWR)
SYT_ECOLI
[Raw transfer]




SSA_B_6(1FYF)
SYT_ECOLI
[Raw transfer]




1B3_B_6(4HWS)
SYT_ECOLI
[Raw transfer]




1B3_A_4(4HWS)
SYT_ECOLI
[Raw transfer]




1B2_B_6(4HWR)
SYT_ECOLI
[Raw transfer]




X16_A_4(4HWP)
SYT_ECOLI
[Raw transfer]




X16_B_6(4HWP)
SYT_ECOLI
[Raw transfer]




AMP_A_4(1QF6)
SYT_ECOLI
[Raw transfer]




THR_B_5(1EVK)
SYT_ECOLI
[Raw transfer]




2CR_B_9(4P3O)
SYT_ECOLI
[Raw transfer]




2CR_A_4(4P3P)
SYT_ECOLI
[Raw transfer]




2CR_A_4(4P3O)
SYT_ECOLI
[Raw transfer]




2CR_B_8(4P3P)
SYT_ECOLI
[Raw transfer]




54 HHSearch 94.6249% -98 - C1 -1QF6 6.3 SYT_ECOLI
1 PsiBlast_PDB 92.3751% -98 - C2 -1QF6 - SYT_ECOLI -
55 HHSearch 88.5943% -95 - C1 -1NYR - SYT_STAAW -
3 PsiBlast_PDB 85.2944% -94 - C1 -1NYR - SYT_STAAW -
2 PsiBlast_PDB 83.8144% -94 - C1 -1NYQ - SYT_STAAW -
21 PsiBlast_CBE 82.7144% -90 - C2 -1NYR - SYT_STAAW -
22 PsiBlast_CBE 80.6144% -91 - C2 -1NYQ - SYT_STAAW -
58 HHSearch 76.3752% -99 * C1 *1EVL - SYT_ECOLI -
4 PsiBlast_PDB 74.3054% -98 - C1 -4HWO 8.2 SYT_ECOLI
9 PsiBlast_PDB 74.2854% -98 - C1 -1EVL - SYT_ECOLI -
38 PsiBlast_CBE 74.0754% -96 - C1 -1EVK 3.2 SYT_ECOLI
10 PsiBlast_PDB 73.9654% -97 - C1 -1FYF 7.4 SYT_ECOLI
8 PsiBlast_PDB 73.8654% -95 - C1 -1EVK - SYT_ECOLI -
39 PsiBlast_CBE 73.8354% -96 - C1 -4P3P 6.1 SYT_ECOLI
7 PsiBlast_PDB 73.7754% -99 - C1 -4HWS 9.1 SYT_ECOLI
40 PsiBlast_CBE 73.6954% -94 - C1 -4P3O 5.0 SYT_ECOLI
35 PsiBlast_CBE 73.6154% -94 - C1 -1EVL - SYT_ECOLI -
37 PsiBlast_CBE 73.5554% -97 - C1 -1EVL - SYT_ECOLI -
26 PsiBlast_CBE 73.5154%-100 - C1 -4HWO 8.3 SYT_ECOLI
23 PsiBlast_CBE 73.3954% -99 - C1 -4HWS 8.7 SYT_ECOLI
13 PsiBlast_PDB 73.3654% -96 - C1 -4P3P 6.1 SYT_ECOLI
34 PsiBlast_CBE 73.2954% -98 - C1 -1FYF 7.9 SYT_ECOLI
24 PsiBlast_CBE 73.2354% -98 - C1 -4HWR 6.7 SYT_ECOLI
5 PsiBlast_PDB 73.1654% -98 - C1 -4HWP 7.6 SYT_ECOLI
25 PsiBlast_CBE 72.9554% -97 - C1 -4HWP 7.9 SYT_ECOLI
6 PsiBlast_PDB 72.6754% -99 - C1 -4HWR 6.3 SYT_ECOLI
12 PsiBlast_PDB 72.4154% -96 - C1 -4P3O 6.7 SYT_ECOLI
57 HHSearch 69.6736% -89 - C1 -3UH0 7.7 SYTM_YEAST
18 PsiBlast_PDB 64.3235% -83 - C1 -3UH0 7.7 SYTM_YEAST