@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Wbm0504: (2015-12-02 )
MDKKTRIESDSLGEVKVPSEHYWGAQTQRSLENFKIGMEKMPEPIIKALAMVKLAAARVNVKHGTIDEKVGNAICVAAKEIIDGKFNNEFPLVVWQTGSGTQTNMNINEVISNRAIEILGSNLGSKFPVHPNDHVNYGQSSNDTFPTAMHIAAAKQINHSLIPNLEVLHKALNDKVQEFKNIIKVGRTHLQDATPLTLGQEFSGYAVQIKKGIERIKSTLSNLYELAQGGTAVGTGLNTKEGFAEDFAKEVAEITNLPFTSADNKFEALAANDALVELSGTLNTVAVSLMKIASDIRLLGSGPRCGIGEITLPENEPGSSIMPGKVNPTQCEAVTMVCAQVMGNHVAVTVSGSNGHFELNVFKPVIIYNVLQSIRLLADASLNFTEKCVIGIKANEKRIKDLLNQSLMLVTILNTHIGYDNAAKIAKLAYKENITLKEAAVKLKLLTEQEFERIVKPEKFINH

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PMA_B_11(1FUP)
FUMC_ECOLI
[Raw transfer]




PMA_A_9(1FUP)
FUMC_ECOLI
[Raw transfer]




CIT_A_5(2FUS)
FUMC_ECOLI
[Raw transfer]




CIT_A_9(1FUO)
FUMC_ECOLI
[Raw transfer]




CIT_A_4(1FUQ)
FUMC_ECOLI
[Raw transfer]




CIT_G_7(1KQ7)
FUMC_ECOLI
[Raw transfer]




CIT_B_7(2FUS)
FUMC_ECOLI
[Raw transfer]




LMR_B_5(3RRP)
?
[Raw transfer]




LMR_A_3(3RRP)
?
[Raw transfer]




CIT_I_9(1KQ7)
FUMC_ECOLI
[Raw transfer]




CIT_B_6(1FUQ)
FUMC_ECOLI
[Raw transfer]




CIT_B_11(1FUO)
FUMC_ECOLI
[Raw transfer]




UNL_A_3(3TV2)
?
[Raw transfer]




21 PsiBlast_CBE 98.6567% -89 - C3 -3E04 - FUMH_HUMAN -
1 PsiBlast_PDB 96.3567% -88 - C3 -3E04 - FUMH_HUMAN -
22 PsiBlast_CBE 95.9367% -90 - C3 -3E04 - FUMH_HUMAN -
4 PsiBlast_PDB 95.1461% -85 - C3 -3TV2 2.8 ?
64 HHSearch 95.1167% -86 - C3 -3E04 - FUMH_HUMAN -
3 PsiBlast_PDB 94.9663% -87 - C3 -4HGV - FUMC_RHIME -
2 PsiBlast_PDB 93.6565% -82 - C3 -3GTD - FUMC_RICPR -
8 PsiBlast_PDB 92.9158% -84 - C3 -1YFE - FUMC_ECOLI -
24 PsiBlast_CBE 92.4158% -82 - C3 -1FUQ 2.8 FUMC_ECOLI
26 PsiBlast_CBE 92.2058% -83 - C3 -1FUO 3.6 FUMC_ECOLI
28 PsiBlast_CBE 91.9558% -82 - C3 -2FUS 2.6 FUMC_ECOLI
7 PsiBlast_PDB 91.8758% -83 - C3 -1FUO 3.6 FUMC_ECOLI
29 PsiBlast_CBE 91.6758% -82 - C3 -1FUR - FUMC_ECOLI -
25 PsiBlast_CBE 91.6158% -83 - C3 -1FUP 4.6 FUMC_ECOLI
27 PsiBlast_CBE 91.3358% -80 - C3 -1KQ7 2.5 FUMC_ECOLI
5 PsiBlast_PDB 91.1458% -83 - C3 -1FUP 4.2 FUMC_ECOLI
11 PsiBlast_PDB 90.7958% -81 - C3 -2FUS 3.5 FUMC_ECOLI
6 PsiBlast_PDB 90.6058% -79 - C3 -1FUQ 3.6 FUMC_ECOLI
10 PsiBlast_PDB 89.5958% -81 - C3 -1FUR - FUMC_ECOLI -
9 PsiBlast_PDB 89.5158% -81 - C3 -1KQ7 3.5 FUMC_ECOLI
15 PsiBlast_PDB 83.0051% -76 - C3 -3RRP 2.2 ?
30 PsiBlast_CBE 81.2151% -78 - C3 -3RRP 2.3 ?