@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Wbm0528: (2015-12-02 )
MVTINKDVLAKEKVVVAPEPIEKSEQIFDNGMIKQTTNEGIKEIRKTLNLSELREKTAEELLNLAEERKISTNGKGNGRMLKQEMIFNLMKKMSEEGGITIGSGVVEILPDGFGFLRSANANYAPSTDDVYISNGQIKKFNLRTGDIVCGEIRPPSDKERYFTLTKVQGINFTEVSELRKYVHFDNLLPLYPEESLILENNSSGDNKKDINMRAVDIVAPLGKGQRALIVAPPRTGKTILLQQMAHSIATNHPEIELIVLLIDERPEEVTDMMRSVKGEVVSSTFDEPAYRHVQLAEIVIEKAKRMVEHKKDVVILLDSITRLARAYNAIIPSSGKVLTGGVDSNALQRPKRFFGAARNIENGGSLTIIATALIETGSKMDEVIFEEFKGTGNAEIILDRKLADKRIFPAIDITKSGTRKEELLIDKAILNKIWVLRRILSPMGPVEAMEFLRDKLLLTKSNSDFFNSMNN

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_H_3(1XPR)
RHO_ECOLI
[Raw transfer]
-
NACID_H_2(1PVO)
RHO_ECOLI
[Raw transfer]
-
NACID_H_3(1XPU)
RHO_ECOLI
[Raw transfer]
-
NACID_H_3(1XPO)
RHO_ECOLI
[Raw transfer]
-
NACID_M_2(1XPO)
RHO_ECOLI
[Raw transfer]
-
NACID_M_2(1XPR)
RHO_ECOLI
[Raw transfer]
-
NACID_K_4(1PVO)
RHO_ECOLI
[Raw transfer]
-
NACID_L_6(1XPU)
RHO_ECOLI
[Raw transfer]
-
NACID_G_1(1XPR)
RHO_ECOLI
[Raw transfer]
-
NACID_L_5(1PVO)
RHO_ECOLI
[Raw transfer]
-
NACID_J_4(1XPU)
RHO_ECOLI
[Raw transfer]
-
NACID_J_1(2HT1)
RHO_ECOLI
[Raw transfer]
-
NACID_J_4(1XPR)
RHO_ECOLI
[Raw transfer]
-
NACID_G_1(1XPO)
RHO_ECOLI
[Raw transfer]
-
NACID_K_5(1XPU)
RHO_ECOLI
[Raw transfer]
-
NACID_J_4(1XPO)
RHO_ECOLI
[Raw transfer]
-
NACID_L_6(1XPR)
RHO_ECOLI
[Raw transfer]
-
NACID_J_3(1PVO)
RHO_ECOLI
[Raw transfer]
-
NACID_K_5(1XPO)
RHO_ECOLI
[Raw transfer]
-
NACID_M_2(1XPU)
RHO_ECOLI
[Raw transfer]
-
NACID_L_6(1XPO)
RHO_ECOLI
[Raw transfer]
-
NACID_K_5(1XPR)
RHO_ECOLI
[Raw transfer]
-
NACID_K_4(2HT1)
RHO_ECOLI
[Raw transfer]
-
21 PsiBlast_CBE 96.6860% -90 - C6 -1XPU 6.9 RHO_ECOLI
36 PsiBlast_CBE 96.2760% -91 - C6 -1PVO 7.3 RHO_ECOLI
29 PsiBlast_CBE 96.1660% -95 - C6 -1XPR 5.8 RHO_ECOLI
38 PsiBlast_CBE 95.6960% -88 - C6 -1PVO 6.2 RHO_ECOLI
27 PsiBlast_CBE 95.6860% -93 - C6 -1XPR 5.7 RHO_ECOLI
24 PsiBlast_CBE 95.0160% -86 - C6 -1XPU 4.9 RHO_ECOLI
26 PsiBlast_CBE 94.8860% -90 - C6 -1XPR 5.0 RHO_ECOLI
37 PsiBlast_CBE 94.7560% -91 - C6 -1PVO 6.5 RHO_ECOLI
25 PsiBlast_CBE 94.7360% -89 - C6 -1XPU 4.5 RHO_ECOLI
3 PsiBlast_PDB 94.7160% -95 - C8 -1XPU - RHO_ECOLI -
28 PsiBlast_CBE 94.6360% -89 - C6 -1XPR 6.6 RHO_ECOLI
23 PsiBlast_CBE 94.6160% -84 - C6 -1XPU 5.9 RHO_ECOLI
39 PsiBlast_CBE 94.5760% -90 - C6 -1PVO 6.3 RHO_ECOLI
1 PsiBlast_PDB 94.5460% -94 - C8 -1PVO - RHO_ECOLI -
22 PsiBlast_CBE 94.1160% -86 - C6 -1XPU 6.3 RHO_ECOLI
2 PsiBlast_PDB 94.0460% -86 - C6 -1XPR 4.6 RHO_ECOLI
30 PsiBlast_CBE 93.9660% -90 - C6 -1XPR 5.9 RHO_ECOLI
33 PsiBlast_CBE 93.7360% -91 - C6 -1XPO 5.8 RHO_ECOLI
35 PsiBlast_CBE 93.5160% -87 - C6 -1XPO 5.5 RHO_ECOLI
34 PsiBlast_CBE 93.2960% -89 - C6 -1XPO 5.5 RHO_ECOLI
31 PsiBlast_CBE 93.0860% -86 - C6 -1XPO 4.1 RHO_ECOLI
32 PsiBlast_CBE 92.9660% -85 - C6 -1XPO 3.7 RHO_ECOLI
4 PsiBlast_PDB 91.2960% -86 - C6 -1XPO 4.2 RHO_ECOLI
5 PsiBlast_PDB 78.1860% -91 - C6 -2HT1 4.6 RHO_ECOLI
41 PsiBlast_CBE 77.7960% -85 - C6 -2HT1 5.2 RHO_ECOLI