@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Wbm0559: (2015-12-02 )
MITRIPSVIYSLLNMRKLVSEYDIVVIGSGPGGYIAAIRAAQLGFKTAIIEKEKSLGGICLNWGCIPTKSLLRASKVYELIKRSEEFGIKVKDASFDIQSIVKSSRNVVGKLSSGVAYLMKKNGIKVYQGFGKLAGNHTIKVSSGREEQEISSRHIILATGVRMRNLHGIEADGDLLWNAQHAMTPDRLPKSLLIIGSGAIGIEFASFYSTLGVDVTIIEVKNAILPLEDKDISNLAQEIFTRKGIRIYTNNSVKAFTKGKNSIKVQLSSGESKEFDRVIVAVGIQASTESIGLENTKVKLSASGFVETNEWYETDESSVYAIGDIAGPPCLAHKASHEAVICIERIAGKNVRALRKECIPNCTYSHPQIASVGLTEEQAIKDGYDIKIGKFHSNFNGKSITLGETEGLVKVIIDKKTGELLGAHMIGVGVTELISNFVLVKQLEGTDCDIKSVVFPHPTISEMIHESVLAAYDESLNS

Atome Classification :

(33 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_A_3(2QAE)
DLDH_TRYCR
[Raw transfer]




FAD_A_3(2QAE)
DLDH_TRYCR
[Raw transfer]




FAD_B_4(2QAE)
DLDH_TRYCR
[Raw transfer]




FAD_B_6(2EQ7)
?
[Raw transfer]




FAD_C_3(1JEH)
DLDH_YEAST
[Raw transfer]




FAD_B_8(2YQU)
?
[Raw transfer]




FAD_B_4(3LAD)
DLDH_AZOVI
[Raw transfer]




FAD_B_5(1V59)
DLDH_YEAST
[Raw transfer]




FAD_A_4(1V59)
DLDH_YEAST
[Raw transfer]




FAD_A_7(2YQU)
?
[Raw transfer]




FAD_C_3(1OJT)
?
[Raw transfer]




FAD_A_3(3LAD)
DLDH_AZOVI
[Raw transfer]




FAD_D_4(1JEH)
DLDH_YEAST
[Raw transfer]




FAD_B_4(1LPF)
DLDH_PSEFL
[Raw transfer]




FAD_A_3(3URH)
?
[Raw transfer]




FAD_B_4(2EQ6)
?
[Raw transfer]




FAD_B_5(1EBD)
DLDH1_GEOSE
[Raw transfer]




FAD_A_3(2A8X)
DLDH_MYCTU
[Raw transfer]




FAD_A_4(1EBD)
DLDH1_GEOSE
[Raw transfer]




FAD_A_3(2EQ6)
?
[Raw transfer]




17 PsiBlast_PDB 94.5637%-102 - C2 -4M52 - DLDH_MYCTU -
7 PsiBlast_PDB 93.4136%-101 - C2 -3LAD - DLDH_AZOVI -
74 PsiBlast_CBE 93.0737%-103 - C2 -4M52 - DLDH_MYCTU -
6 PsiBlast_PDB 92.8037%-102 - C2 -1LPF - DLDH_PSEFL -
18 PsiBlast_PDB 92.7237%-103 - C2 -2A8X - DLDH_MYCTU -
63 PsiBlast_CBE 92.7136% -99 - C2 -1ZY8 - DLDH_HUMAN -
16 PsiBlast_PDB 92.4437%-101 - C2 -3II4 - DLDH_MYCTU -
35 PsiBlast_CBE 92.3236%-101 - C2 -3LAD 12.1 DLDH_AZOVI
98 HHSearch 92.3036% -98 - C2 -3LAD 11.1 DLDH_AZOVI
73 PsiBlast_CBE 92.3037%-102 - C2 -4M52 - DLDH_MYCTU -
79 PsiBlast_CBE 92.0534%-101 - C2 -2QAE 12.3 DLDH_TRYCR
34 PsiBlast_CBE 92.0537%-102 - C2 -1LPF 12.1 DLDH_PSEFL
108 HHSearch 91.8737% -96 - C2 -2YQU 12.2 ?
61 PsiBlast_CBE 91.8636% -97 - C2 -1ZY8 - DLDH_HUMAN -
76 PsiBlast_CBE 91.6737%-101 - C2 -3II4 - DLDH_MYCTU -
12 PsiBlast_PDB 91.4836% -94 - C2 -3RNM - DLDH_HUMAN -
75 PsiBlast_CBE 91.4637%-102 - C2 -4M52 - DLDH_MYCTU -
69 PsiBlast_CBE 91.2836%-100 - C2 -1EBD 11.7 DLDH1_GEOSE
60 PsiBlast_CBE 91.1136% -97 - C2 -1ZY8 - DLDH_HUMAN -
80 PsiBlast_CBE 91.0534%-101 - C2 -2QAE 12.1 DLDH_TRYCR
103 HHSearch 90.7940% -98 - C2 -2EQ6 13.1 ?
106 HHSearch 90.5336%-103 - C2 -1EBD 12.2 DLDH1_GEOSE
95 HHSearch 90.1535%-100 - C2 -3URH 12.2 ?
20 PsiBlast_PDB 90.0133% -99 - C2 -1V59 12.6 DLDH_YEAST
32 PsiBlast_CBE 89.7436% -94 - C2 -2YQU 12.4 ?
33 PsiBlast_CBE 89.6336% -93 - C2 -2EQ7 12.7 ?
93 HHSearch 89.5935% -95 * C2 *2QAE 12.1 DLDH_TRYCR
78 PsiBlast_CBE 89.3133% -99 - C2 -1JEH 12.7 DLDH_YEAST
77 PsiBlast_CBE 89.2333% -99 - C2 -1V59 12.9 DLDH_YEAST
19 PsiBlast_PDB 88.8933% -96 - C2 -1JEH 12.9 DLDH_YEAST
104 HHSearch 88.0236% -97 - C2 -2A8X 12.0 DLDH_MYCTU
94 HHSearch 85.7032% -86 - C2 -1OJT 10.4 ?
31 PsiBlast_CBE 84.1739% -97 - C2 -2EQ6 13.1 ?