@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Wbm0566: (2015-12-02 )
MKNYRFGTKVLIIGSGAAGYAAAIYAARANLEPVVVTGMQPGGQLTITMGVENYPGFVSIQGPELMKQMRLHVEKVGAEIVNDEIKSVEQLEYSNEYKFRSSGNNDDYYSNAVIIAAGSQAKWLGLESERKFQGYGVSACATCDGAFFRNKIVAVIGGGNTAVEEAIFLTRFAKEVILIHRRDKLRAEKIMQDRLFANNKIKVIWNHTVEQVLGEENPKKVTGITIKSTKIDEIQELRVNGVFIAIGHAPNTGVFKSFIEMDEQGYIITKPGTTLTSRAGVFAAGDVQDKVYRQAVVAAGTGCMAALDAEKFLECTSK

Atome Classification :

(40 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDP_B_9(4CBQ)
?
[Raw transfer]




NDP_B_6(4A5L)
?
[Raw transfer]




NAP_B_6(2Q0K)
TRXB_HELPY
[Raw transfer]




NAP_A_4(2Q0K)
TRXB_HELPY
[Raw transfer]




NDP_B_6(4UP3)
?
[Raw transfer]




NAP_A_4(2Q0L)
TRXB_HELPY
[Raw transfer]




FAD_C_3(1CL0)
TRXB_ECOLI
[Raw transfer]




NAP_A_4(2Q0L)
TRXB_HELPY
[Raw transfer]




NDP_A_3(4CBQ)
?
[Raw transfer]




NAP_A_4(4CCQ)
?
[Raw transfer]




NAP_B_6(2Q0L)
TRXB_HELPY
[Raw transfer]




FAD_B_8(4CCR)
?
[Raw transfer]




NDP_A_4(4UP3)
?
[Raw transfer]




FAD_C_3(1TRB)
TRXB_ECOLI
[Raw transfer]




FAD_E_5(1VDC)
TRXB1_ARATH
[Raw transfer]




FAD_C_3(1TRB)
TRXB_ECOLI
[Raw transfer]




FAD_A_3(2WHD)
?
[Raw transfer]




FDA_A_2(4JNQ)
?
[Raw transfer]




FAD_B_6(2WHD)
?
[Raw transfer]




FAD_A_5(2A87)
TRXB_MYCTU
[Raw transfer]




FAD_A_5(2A87)
TRXB_MYCTU
[Raw transfer]




FAD_A_6(4CCR)
?
[Raw transfer]




FAD_B_10(4A65)
?
[Raw transfer]




FAD_B_10(4CCQ)
?
[Raw transfer]




FAD_A_3(2Q7V)
?
[Raw transfer]




FAD_B_7(2A87)
TRXB_MYCTU
[Raw transfer]




CIT_B_9(3ITJ)
TRXB1_YEAST
[Raw transfer]




CIT_A_6(3ITJ)
TRXB1_YEAST
[Raw transfer]




CIT_C_12(3ITJ)
TRXB1_YEAST
[Raw transfer]




ACY_B_9(3F8P)
?
[Raw transfer]




ACY_B_8(3F8D)
?
[Raw transfer]




CIT_D_14(3ITJ)
TRXB1_YEAST
[Raw transfer]




1 PsiBlast_PDB 98.0054%-117 - C2 -4JNQ 13.2 ?
8 PsiBlast_PDB 94.2647%-114 - C2 -1VDC - TRXB1_ARATH -
4 PsiBlast_PDB 92.8352%-109 - C2 -1TRB 11.7 TRXB_ECOLI
2 PsiBlast_PDB 92.6253%-109 - C2 -1CL0 12.9 TRXB_ECOLI
23 PsiBlast_CBE 92.3152%-109 - C2 -1F6M - TRXB_ECOLI -
21 PsiBlast_CBE 92.1652%-110 - C2 -1F6M - TRXB_ECOLI -
63 HHSearch 91.6948%-109 - C2 -1VDC 12.1 TRXB1_ARATH
3 PsiBlast_PDB 91.5452%-109 - C2 -1F6M - TRXB_ECOLI -
22 PsiBlast_CBE 91.4352%-110 - C2 -1F6M - TRXB_ECOLI -
71 HHSearch 90.7352%-108 - C2 -1TRB 11.7 TRXB_ECOLI
30 PsiBlast_CBE 89.8545%-110 - C2 -2WHD 12.4 ?
10 PsiBlast_PDB 89.5045%-110 - C2 -2WHD 12.6 ?
28 PsiBlast_CBE 89.3246%-111 - C2 -3D8X - TRXB1_YEAST -
62 HHSearch 89.2846%-108 * C2 *3ITJ 3.0 TRXB1_YEAST
67 HHSearch 89.0748%-106 - C2 -2A87 10.0 TRXB_MYCTU
27 PsiBlast_CBE 88.8946%-109 - C2 -3ITJ 3.5 TRXB1_YEAST
6 PsiBlast_PDB 88.6346%-109 - C2 -3ITJ - TRXB1_YEAST -
26 PsiBlast_CBE 88.5946%-106 - C2 -3ITJ 3.8 TRXB1_YEAST
7 PsiBlast_PDB 88.4246%-112 - C2 -3D8X - TRXB1_YEAST -
5 PsiBlast_PDB 87.1348%-107 - C2 -2A87 9.9 TRXB_MYCTU
24 PsiBlast_CBE 87.0148%-106 - C2 -2A87 11.0 TRXB_MYCTU
68 HHSearch 87.0044%-108 - C2 -2Q7V 12.6 ?
25 PsiBlast_CBE 86.2646%-111 - C2 -3ITJ 3.1 TRXB1_YEAST
16 PsiBlast_PDB 86.2343%-113 - C2 -4CCR 11.8 ?
35 PsiBlast_CBE 86.1743%-111 - C2 -4CBQ 8.0 ?
17 PsiBlast_PDB 85.7743%-114 - C2 -4UP3 9.8 ?
38 PsiBlast_CBE 85.5943%-111 - C2 -4UP3 7.7 ?
36 PsiBlast_CBE 85.3543%-112 - C2 -4A65 12.1 ?
37 PsiBlast_CBE 85.3343%-115 - C2 -4A5L 7.4 ?
33 PsiBlast_CBE 85.3043%-111 - C2 -4CCR 11.5 ?
14 PsiBlast_PDB 85.0543%-115 - C2 -4CBQ 9.3 ?
34 PsiBlast_CBE 84.7943%-110 - C2 -4CCQ 12.0 ?
15 PsiBlast_PDB 84.3343%-112 - C2 -4CCQ 8.5 ?
53 PsiBlast_CBE 83.4735%-119 - C2 -3F8D 3.9 ?
65 HHSearch 82.9037%-114 - C2 -2Q0L 8.8 TRXB_HELPY
44 PsiBlast_CBE 82.7936%-120 - C2 -3F8P 3.7 ?
50 PsiBlast_CBE 81.3836%-116 - C2 -2Q0K 7.7 TRXB_HELPY
49 PsiBlast_CBE 80.5036%-115 - C2 -2Q0L 8.8 TRXB_HELPY
48 PsiBlast_CBE 80.2236%-117 - C2 -2Q0L 7.4 TRXB_HELPY
20 PsiBlast_PDB 79.5836%-118 - C2 -2Q0K 7.9 TRXB_HELPY