@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Wbm0589: (2015-12-02 )
MPELPEVEIISNFLFDKIKNKQISGVTVNNWNLRVPITQNIDDVIKGKVINNIKRRGKYIIWHIDNDIVVTVHLGMSGKLIYAKGEQAQNKHDHVIFSFSDNTSIIFNDPRKFGLVIILNKEQEVNFFNDFGIEPFTDEFNGDYLQKLLKSKKVNIKSALMNNKLIVGIGNIYASESLFRARISPLRSAQDLTYKECEKLATEIKNTLSDAIIAGGSTLKDYAQPSGSVGYFQNSFYVYGKVQKPCKICNNTITLIRQNGRSTYFCNACQN

Atome Classification :

(45 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_H_7(1K82)
FPG_ECOLI
[Raw transfer]

-

NACID_B_1(1TDZ)
FPG_LACLC
[Raw transfer]

-

NACID_B_2(4PDI)
FPG_LACLC
[Raw transfer]

-

GOL_A_2(3TWL)
FPG_ARATH
[Raw transfer]




NACID_B_2(2XZU)
FPG_LACLC
[Raw transfer]

-

NACID_C_3(3GPY)
?
[Raw transfer]

-

NACID_D_1(1NNJ)
FPG_LACLC
[Raw transfer]

-

GOL_D_8(3SAR)
?
[Raw transfer]




NACID_D_1(1PJI)
FPG_LACLC
[Raw transfer]

-

NACID_C_3(3JR5)
?
[Raw transfer]

-

NACID_B_1(1XC8)
FPG_LACLC
[Raw transfer]

-

NACID_C_2(1R2Y)
?
[Raw transfer]

-

NACID_B_2(2XZF)
FPG_LACLC
[Raw transfer]

-

NACID_B_2(3C58)
FPG_LACLC
[Raw transfer]

-

CHAIN_D_4(4CIS)
?
[Raw transfer]

-

NACID_D_1(1PJJ)
FPG_LACLC
[Raw transfer]

-

NACID_B_1(1L2D)
?
[Raw transfer]

-

NACID_E_1(1K82)
FPG_ECOLI
[Raw transfer]

-

NACID_E_1(1K82)
FPG_ECOLI
[Raw transfer]

-

NACID_E_1(1K82)
FPG_ECOLI
[Raw transfer]

-

NACID_C_2(1L1Z)
?
[Raw transfer]

-

NACID_C_2(1L1T)
?
[Raw transfer]

-

NACID_B_2(4PD2)
FPG_LACLC
[Raw transfer]

-

NACID_B_2(4PDG)
FPG_LACLC
[Raw transfer]

-

NACID_C_2(2F5S)
?
[Raw transfer]

-

NACID_D_1(1PM5)
FPG_LACLC
[Raw transfer]

-

NACID_C_2(2F5Q)
?
[Raw transfer]

-

CHAIN_D_4(4CIS)
?
[Raw transfer]

-

NACID_B_2(4PCZ)
FPG_LACLC
[Raw transfer]

-

NACID_B_2(3GQ4)
?
[Raw transfer]

-

NACID_G_5(1K82)
FPG_ECOLI
[Raw transfer]

-

NACID_F_3(1K82)
FPG_ECOLI
[Raw transfer]

-

NACID_B_1(1L2B)
?
[Raw transfer]

-

NACID_B_1(1L2C)
?
[Raw transfer]

-

NACID_B_1(1R2Z)
?
[Raw transfer]

-

NACID_B_2(3JR4)
?
[Raw transfer]

-

TRS_B_2(1TDH)
NEIL1_HUMAN
[Raw transfer]




23 PsiBlast_CBE 91.4539%-106 - C12 -1K82 7.2 FPG_ECOLI
21 PsiBlast_CBE 90.5539%-101 - C12 -1K82 7.1 FPG_ECOLI
1 PsiBlast_PDB 90.4839%-106 - C12 -1K82 6.9 FPG_ECOLI
22 PsiBlast_CBE 90.2939%-104 - C12 -1K82 7.2 FPG_ECOLI
106 Fugue 89.0938%-104 - C12 -1K82 6.9 FPG_ECOLI
14 PsiBlast_PDB 88.8935%-103 - C12 -3GPP - ? -
5 PsiBlast_PDB 88.8035% -97 - C12 -1L2C 4.1 ?
116 HHSearch 88.7439% -97 - C12 -1K82 6.9 FPG_ECOLI
7 PsiBlast_PDB 88.5435%-101 - C12 -2F5N - ? -
8 PsiBlast_PDB 88.4935% -99 - C12 -2F5O - ? -
36 PsiBlast_CBE 88.1734%-102 - C12 -3SAW - ? -
6 PsiBlast_PDB 87.9335% -95 - C12 -1L2D 5.2 ?
2 PsiBlast_PDB 87.8935% -97 - C12 -1L1T 6.6 ?
28 PsiBlast_CBE 87.8034%-102 - C12 -3U6P - ? -
16 PsiBlast_PDB 87.7835%-104 - C12 -3SAR 3.0 ?
15 PsiBlast_PDB 87.7435%-103 - C12 -3GQ5 - ? -
34 PsiBlast_CBE 87.7234%-101 - C12 -3U6C - ? -
117 HHSearch 87.6035%-104 * C12 *3U6P - ? -
33 PsiBlast_CBE 87.4034%-101 - C12 -3U6D - ? -
19 PsiBlast_PDB 87.3735%-103 - C12 -3GP1 - ? -
4 PsiBlast_PDB 87.2035% -92 - C12 -1L2B 5.6 ?
41 PsiBlast_CBE 86.7434% -96 - C12 -3JR4 4.3 ?
3 PsiBlast_PDB 86.6235% -95 - C12 -1L1Z 5.3 ?
25 PsiBlast_CBE 86.3934% -89 - C12 -3GPY 7.7 ?
13 PsiBlast_PDB 86.2334% -90 - C12 -2F5S 9.2 ?
24 PsiBlast_CBE 86.1034% -90 - C12 -3GQ4 5.3 ?
40 PsiBlast_CBE 86.0934% -89 - C12 -3JR5 7.8 ?
46 PsiBlast_CBE 85.9534% -91 - C12 -4CIS 6.5 ?
12 PsiBlast_PDB 85.7534% -86 - C12 -2F5Q 10.8 ?
11 PsiBlast_PDB 85.5734% -91 - C12 -1R2Z 4.0 ?
47 PsiBlast_CBE 85.4334% -97 - C12 -4CIS 6.1 ?
10 PsiBlast_PDB 85.3734% -88 - C12 -1R2Y 10.9 ?
54 PsiBlast_CBE 83.2333% -92 - C12 -1XC8 7.9 FPG_LACLC
53 PsiBlast_CBE 82.8933% -91 - C12 -2XZF 6.5 FPG_LACLC
52 PsiBlast_CBE 82.8833% -89 - C12 -2XZU 4.9 FPG_LACLC
50 PsiBlast_CBE 82.8633% -93 - C12 -4PDG 4.8 FPG_LACLC
56 PsiBlast_CBE 82.4033% -94 - C12 -1PJI 5.2 FPG_LACLC
49 PsiBlast_CBE 82.2533% -93 - C12 -4PDI 8.0 FPG_LACLC
61 PsiBlast_CBE 82.1933% -93 - C12 -1NNJ 4.4 FPG_LACLC
64 PsiBlast_CBE 82.1232% -95 - C12 -4PD2 4.6 FPG_LACLC
57 PsiBlast_CBE 82.0433% -88 - C12 -4PCZ 4.9 FPG_LACLC
48 PsiBlast_CBE 82.0033% -95 - C12 -1TDZ 5.3 FPG_LACLC
55 PsiBlast_CBE 81.9633% -89 - C12 -1PM5 5.0 FPG_LACLC
51 PsiBlast_CBE 81.6033% -91 - C12 -3C58 7.4 FPG_LACLC
60 PsiBlast_CBE 81.1333% -91 - C12 -1PJJ 4.8 FPG_LACLC