@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Wbm0642: (2015-12-03 )
MAYPDFTLENKLSGVIAGVDEVGRGPLAGPVMSAAVVFTNRNIIIEGINDSKKLTAKNRQVLYEKIISVAKFGIGMASVAEINSYNILQATKLSMERALVNLGIELDYVLVDGNQPPKVKWQVKSIVKGDSLSVSVAAASIVAKVARDQLMQELHNQYPEYNWYKNKGYGTKGHIDAINLYGVTEHHRKSFAPILNSTKRALL

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

EDO_A_7(2ETJ)
RNH2_THEMA
[Raw transfer]




NACID_C_2(3O3H)
RNH2_THEMA
[Raw transfer]

-

NACID_C_2(3O3G)
RNH2_THEMA
[Raw transfer]

-

NACID_C_2(4HHT)
RNH2_THEMA
[Raw transfer]

-

NACID_C_2(3O3F)
RNH2_THEMA
[Raw transfer]

-

NACID_C_2(4HHT)
RNH2_THEMA
[Raw transfer]

-

3 PsiBlast_PDB 97.1249% -94 - C3 -3O3H 5.0 RNH2_THEMA
1 PsiBlast_PDB 96.8150% -88 - C3 -3O3G 4.6 RNH2_THEMA
2 PsiBlast_PDB 96.3349% -94 - C3 -3O3F 4.2 RNH2_THEMA
35 Fugue 96.2349% -86 - C3 -4HHT 4.7 RNH2_THEMA
22 HHSearch 94.7250% -89 - C3 -2ETJ 2.8 RNH2_THEMA
5 PsiBlast_PDB 92.1650% -92 - C3 -2ETJ - RNH2_THEMA -
4 PsiBlast_PDB 92.1050%-108 - C3 -4HHT 4.7 RNH2_THEMA
6 PsiBlast_PDB 81.4531% -95 - C3 -1UAX - RNH2_PYRHO -
7 PsiBlast_PDB 80.5828% -81 - C3 -2DFF - RNH2_THEKO -
24 HHSearch 80.2831% -86 - C3 -1IO2 - RNH2_THEKO -
11 PsiBlast_PDB 80.0828% -88 - C3 -1X1P - RNH2_THEKO -
10 PsiBlast_PDB 78.3828% -84 - C3 -2DFH - RNH2_THEKO -
9 PsiBlast_PDB 78.0028% -82 - C3 -1IO2 - RNH2_THEKO -
23 HHSearch 76.4228% -82 - C3 -1UAX - RNH2_PYRHO -
37 Fugue 76.0728% -73 * C3 *1IO2 - RNH2_THEKO -
28 HHSearch 75.7226% -69 - C3 -2D0B - ? -
15 PsiBlast_PDB 75.6327% -68 - C3 -3P5J - RNH2A_MOUSE -
25 HHSearch 75.6224% -76 - C3 -1I39 - RNH2_ARCFU -
39 Fugue 73.3823% -44 - C3 -3ASM - ? -
38 Fugue 72.6722% -61 - C3 -2D0B - ? -