@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Wbm0653: (2015-12-03 )
MVQVVEAFGKPHVNVGTIGHVDHGKTTLTAAITKHYGNFVAYDQIDKAPEERKRGITIATAHVEYQTEKRHYAHVDCPGHADYVKNMIVGAAQMDAAILVVSGVDGPMPQTREHILLAKQVGVGYIVVYINKADVSDPDMIGLVEMEVRELLSKYGFPGDEVPVVIGSALKALEDDDGEYGKKSIDKLMERLDDYVEVPPRSVDLPFLLPIEDVFSISGRGTVVTGRIEKGEIKIGDEIEIIGLKATQKTTCTGVEMFKKLLEKGSAGLNVGILLRGTKREEVERGQVLAKPGTITPHRKFKAEVYILKKEEGGRHTPFFANYQPQFYLRTTDVTGSIKLLEGKEMVMPGDNVSIEVELQVPIAMDKGLRFAIREGGRTVGSGVVSEILE

Atome Classification :

(40 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GNP_A_2(2C78)
EFTU1_THET8
[Raw transfer]




GNP_A_2(4H9G)
EFTU1_THETH
[Raw transfer]




NACID_T_3(4FWT)
EFTU2_ECOLI
[Raw transfer]

-

GNP_A_2(4LBV)
EFTU1_THETH
[Raw transfer]




GDP_A_3(1HA3)
EFTU1_THET8
[Raw transfer]




GNP_A_2(4LBZ)
EFTU1_THETH
[Raw transfer]




NACID_T_3(3VNU)
EFTU2_ECOLI
[Raw transfer]

-

GNP_A_2(4LBW)
EFTU1_THETH
[Raw transfer]




NACID_T_3(3AVU)
EFTU2_ECOLI
[Raw transfer]

-

NACID_T_3(3VNV)
EFTU2_ECOLI
[Raw transfer]

-

GNP_A_3(1EXM)
EFTU1_THETH
[Raw transfer]




GNP_A_2(4LC0)
EFTU1_THETH
[Raw transfer]




GNP_P_9(1B23)
EFTU_THEAQ
[Raw transfer]




GNP_A_2(4LBY)
EFTU1_THETH
[Raw transfer]




GDP_B_7(1HA3)
EFTU1_THET8
[Raw transfer]




GNP_A_3(1EFT)
EFTU_THEAQ
[Raw transfer]




GNP_B_6(2BVN)
EFTU2_ECOLI
[Raw transfer]




GNP_A_3(2BVN)
EFTU2_ECOLI
[Raw transfer]




GNP_A_5(1OB2)
EFTU2_ECOLI
[Raw transfer]




GNP_A_3(4PC7)
EFTU1_ECOLI
[Raw transfer]




NACID_T_3(3AVX)
EFTU2_ECOLI
[Raw transfer]

-

NACID_T_3(3AVW)
EFTU2_ECOLI
[Raw transfer]

-

NACID_T_3(3AVV)
EFTU2_ECOLI
[Raw transfer]

-

NACID_T_3(3AVY)
EFTU2_ECOLI
[Raw transfer]

-

105 HHSearch 96.7872%-110 - C4 -3AVX - EFTU2_ECOLI (first) -
65 PsiBlast_CBE 95.9968%-104 - C4 -4J0Q - EFTU1_PSEPK -
66 PsiBlast_CBE 95.9768%-107 - C4 -4IW3 - EFTU1_PSEPK -
67 PsiBlast_CBE 95.8368%-102 - C4 -4IW3 - EFTU1_PSEPK -
64 PsiBlast_CBE 95.6168%-105 - C4 -4J0Q - EFTU1_PSEPK -
63 PsiBlast_CBE 95.5268%-103 - C4 -4J0Q - EFTU1_PSEPK -
21 PsiBlast_CBE 94.9070%-103 - C4 -3MMP - EFTU2_ECOLI -
26 PsiBlast_CBE 94.8170%-103 - C4 -4PC3 - EFTU1_ECOLI -
10 PsiBlast_PDB 94.5270%-108 - C4 -3VNV Error EFTU2_ECOLI (first)
12 PsiBlast_PDB 94.5170%-104 - C4 -3MMP - EFTS_ECOLI (first) -
41 PsiBlast_CBE 94.3570% -94 - C4 -1D8T - EFTU1_ECOLI -
53 PsiBlast_CBE 94.3066%-103 - C4 -4H9G 9.6 EFTU1_THETH
7 PsiBlast_PDB 94.2970%-105 - C4 -3AVX 2.1 EFTU2_ECOLI (first)
28 PsiBlast_CBE 94.2670%-108 - C4 -4PC1 - ? -
25 PsiBlast_CBE 94.1670%-100 - C4 -4PC6 - ? -
31 PsiBlast_CBE 94.0570%-100 - C4 -3U6K - EFTU1_ECOLI -
43 PsiBlast_CBE 93.9567%-102 - C4 -1TUI - EFTU_THEAQ -
6 PsiBlast_PDB 93.8770%-105 - C4 -3AVW 3.3 EFTU2_ECOLI (first)
20 PsiBlast_PDB 93.8670%-101 - C4 -4PC6 - ? -
3 PsiBlast_PDB 93.8270%-105 - C4 -3AVT - EFTU2_ECOLI (first) -
55 PsiBlast_CBE 93.7466%-101 - C4 -4LC0 9.5 EFTU1_THETH
62 PsiBlast_CBE 93.6966%-102 - C4 -1EXM 9.5 EFTU1_THETH
59 PsiBlast_CBE 93.4966%-101 - C4 -4LBV 9.5 EFTU1_THETH
58 PsiBlast_CBE 93.4566%-101 - C4 -4LBW 9.6 EFTU1_THETH
56 PsiBlast_CBE 93.4566% -96 - C4 -4LBZ 9.4 EFTU1_THETH
57 PsiBlast_CBE 93.3266% -99 - C4 -4LBY 9.5 EFTU1_THETH
8 PsiBlast_PDB 93.3270%-104 - C4 -3AVY 2.8 EFTU2_ECOLI (first)
60 PsiBlast_CBE 93.1666%-108 - C4 -1HA3 8.2 EFTU1_THET8
54 PsiBlast_CBE 92.7366%-102 - C4 -2C78 9.4 EFTU1_THET8
5 PsiBlast_PDB 92.6870%-104 - C4 -3AVV 3.4 EFTU2_ECOLI (first)
4 PsiBlast_PDB 92.6170%-102 - C4 -3AVU Error EFTU2_ECOLI (first)
42 PsiBlast_CBE 92.5366%-101 - C4 -1EFT 9.2 EFTU_THEAQ
11 PsiBlast_PDB 92.5270%-100 - C4 -4FWT Error EFTU2_ECOLI (first)
52 PsiBlast_CBE 92.1867% -99 - C4 -1B23 8.9 EFTU_THEAQ
16 PsiBlast_PDB 92.0970% -95 - C4 -2BVN 8.8 EFTU2_ECOLI
9 PsiBlast_PDB 91.9070%-101 - C4 -3VNU Error EFTU2_ECOLI (first)
22 PsiBlast_CBE 91.8570% -96 - C4 -2BVN 9.2 EFTU2_ECOLI
61 PsiBlast_CBE 91.8366%-104 - C4 -1HA3 9.0 EFTU1_THET8
33 PsiBlast_CBE 89.1570% -91 - C4 -1OB2 6.9 EFTU2_ECOLI
24 PsiBlast_CBE 88.3270% -96 - C4 -4PC7 7.7 EFTU1_ECOLI