@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Wbm0735: (2015-12-04 )
MNKKALLELSNGLKIELPVLSGTMGYDVLNIKDLYKVTGLLTYDPGFVSTASCSSAITFIDGDEGVLRYRGHDIADLAQSNDFTAVIYLLLYGKLPNLEQHKKFFLKIQELSKVPEQVVNVIKAFPKTAHPMSILIACFATLSALYHERYGNNVSNENLDFGISAIAQVPAIIAMVYRHTNDQEFIDTDNELNYSKSFLRMMFGNALDNDKSTLFAKALDKIFTLHADHEQNASTAAVRVVGSAGSNLFACLSAGVATLWGPVHGGANESVINMLKEIEQSGNVDKFIEKAKDDKDPFKLMGFGHRVYKNYDPRARILKDACDEILNKLEQDSKLLKIAKELEKIALKDEYFVVRKLYPNVDFYSGIIMNAINIPPSMFTPIFALARTTGWVTQWYEMINDKETKICRPRQLYVGK

Atome Classification :

(31 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

COA_C_3(1A59)
PRPC_ABDS2
[Raw transfer]




COA_D_4(1AJ8)
CISY_PYRFU
[Raw transfer]




COA_C_3(1AJ8)
CISY_PYRFU
[Raw transfer]




COA_C_3(1AJ8)
CISY_PYRFU
[Raw transfer]




COA_C_3(1AJ8)
CISY_PYRFU
[Raw transfer]




CIT_E_5(1AJ8)
CISY_PYRFU
[Raw transfer]




CIT_F_6(1AJ8)
CISY_PYRFU
[Raw transfer]




GOL_D_4(1VGM)
?
[Raw transfer]




GOL_D_4(1VGM)
?
[Raw transfer]




GOL_A_4(1IOM)
?
[Raw transfer]




GOL_A_4(1IOM)
?
[Raw transfer]




FLC_A_3(2P2W)
?
[Raw transfer]




FLC_A_3(2P2W)
?
[Raw transfer]




67 HHSearch 97.9450%-117 - C10 -2H12 - CISY_ACEAC -
1 PsiBlast_PDB 97.6051%-122 - C10 -2H12 - CISY_ACEAC -
21 PsiBlast_CBE 97.4251%-120 - C10 -2H12 - CISY_ACEAC -
23 PsiBlast_CBE 97.2951%-122 - C10 -2H12 - CISY_ACEAC -
22 PsiBlast_CBE 96.8551%-119 - C10 -2H12 - CISY_ACEAC -
26 PsiBlast_CBE 96.7650%-113 - C10 -3MSU - ? -
25 PsiBlast_CBE 96.7051%-119 - C10 -2H12 - CISY_ACEAC -
24 PsiBlast_CBE 96.7051%-119 - C10 -2H12 - CISY_ACEAC -
2 PsiBlast_PDB 96.1750%-112 - C10 -3MSU - ? -
68 HHSearch 95.6150%-115 - C10 -3MSU - ? -
12 PsiBlast_PDB 94.1646%-115 - C10 -4E6Y - ? -
9 PsiBlast_PDB 92.7547%-102 - C10 -1OWC - CISY_ECOLI -
6 PsiBlast_PDB 92.6547%-103 - C10 -4JAG - CISY_ECOLI -
8 PsiBlast_PDB 92.6147%-102 - C10 -1OWB - CISY_ECOLI -
32 PsiBlast_CBE 92.3947% -99 - C10 -1OWC - CISY_ECOLI -
27 PsiBlast_CBE 92.3847%-102 - C10 -4JAG - CISY_ECOLI -
29 PsiBlast_CBE 92.3747%-100 - C10 -4JAE - CISY_ECOLI -
3 PsiBlast_PDB 92.3247%-103 - C10 -4JAD - CISY_ECOLI -
5 PsiBlast_PDB 92.3047%-103 - C10 -4JAF - CISY_ECOLI -
28 PsiBlast_CBE 92.1247%-100 - C10 -4JAF - CISY_ECOLI -
87 Fugue 84.3236%-102 * C10 *1AJ8 6.6 CISY_PYRFU
73 HHSearch 84.2837%-111 - C10 -1VGM 2.2 ?
70 HHSearch 83.6837%-107 - C10 -1AJ8 6.8 CISY_PYRFU
37 PsiBlast_CBE 83.3936%-103 - C10 -1AJ8 7.6 CISY_PYRFU
16 PsiBlast_PDB 83.0336%-102 - C10 -1AJ8 6.6 CISY_PYRFU
13 PsiBlast_PDB 82.9837%-101 - C10 -1VGM 2.2 ?
69 HHSearch 82.8233%-103 - C10 -1IOM 3.1 ?
76 HHSearch 81.4835%-111 - C10 -2P2W 3.8 ?
18 PsiBlast_PDB 80.6634%-108 - C10 -2P2W 3.8 ?
19 PsiBlast_PDB 80.5732% -94 - C10 -1IOM 3.1 ?
80 HHSearch 80.2831%-101 - C10 -1A59 6.8 PRPC_ABDS2