@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Wbm0737: (2015-12-04 )
MLDKTTKNLLITEINKILPEDSQNRLISAVRYVLLAPAKHIRPFLVVASSQVFNVEIERVISIAMAVECIHTYSLIHDDLPCMDNSDTRRGQLSCHKRFDKATAVLAGDALLTLAFEILSSLNEGSNKRCEIIKALSQAIGAKGMVGGQILDIKTALHVIQHHDYLDPESSVINEHTRQLCNKNRTLGSCAKITPDSKIKEIHLMKTAKLFAASCEIGAIIGSATDKQRRALYNYGVNLGLIFQAKDDIRDYKQDEVNNLMSMLSKSEIENYIDNLFKQALDNLGELSGDTNYLYNLLNQVKRDD

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

RIS_B_12(1RQJ)
ISPA_ECOLI
[Raw transfer]



RIS_A_10(1RQJ)
ISPA_ECOLI
[Raw transfer]



RIS_A_10(1RQJ)
ISPA_ECOLI
[Raw transfer]



DST_B_9(1RQI)
ISPA_ECOLI
[Raw transfer]



DST_A_10(1RQI)
ISPA_ECOLI
[Raw transfer]



IPE_B_13(3Q1O)
?
[Raw transfer]



IPE_A_7(3Q1O)
?
[Raw transfer]



IPE_D_24(3Q1O)
?
[Raw transfer]



IPE_C_18(3Q1O)
?
[Raw transfer]



IPE_A_6(3PDE)
?
[Raw transfer]



GRG_A_3(2J1P)
GGPPS_SINAL
[Raw transfer]



GRG_A_3(2J1P)
GGPPS_SINAL
[Raw transfer]



IPR_A_9(1RQJ)
ISPA_ECOLI
[Raw transfer]



IPR_B_11(1RQJ)
ISPA_ECOLI
[Raw transfer]



PPV_A_3(3NPK)
?
[Raw transfer]
103 HHSearch 96.3034%-111 - C1 -3TS7 - ? -
108 HHSearch 91.6634%-117 - C1 -3UCA - ? -
107 HHSearch 91.4035%-108 - C1 -1RTR - ? -
39 PsiBlast_CBE 91.2836%-101 - C1 -1RQJ 4.9 ISPA_ECOLI
111 HHSearch 90.6433%-102 - C1 -3LSN - ? -
40 PsiBlast_CBE 90.4236% -98 - C1 -1RQI 2.7 ISPA_ECOLI
112 HHSearch 90.1734%-105 - C1 -3LOM - ? -
20 PsiBlast_PDB 90.0836% -99 - C1 -1RQI 2.8 ISPA_ECOLI
19 PsiBlast_PDB 89.6336%-101 - C1 -1RQJ 4.9 ISPA_ECOLI
38 PsiBlast_CBE 89.5436%-101 - C1 -2FOR - ? -
106 HHSearch 89.3535%-103 - C1 -3P8R - ? -
110 HHSearch 89.3234% -96 - C1 -1RQJ 3.6 ISPA_ECOLI
102 HHSearch 89.1635%-111 - C1 -2J1P 8.0 GGPPS_SINAL
104 HHSearch 88.7433%-103 - C1 -3PDE 3.3 ?
21 PsiBlast_CBE 88.6135%-109 - C1 -4KKM - ? -
1 PsiBlast_PDB 88.3935%-108 - C1 -4KKM - ? -
116 HHSearch 88.3832%-103 - C1 -3P8L - ? -
18 PsiBlast_PDB 88.0236% -97 - C1 -2FOR - ? -
53 PsiBlast_CBE 87.8631%-105 * C1 *3TS7 - ? -
54 PsiBlast_CBE 87.4031%-110 - C1 -3TS7 - ? -
113 HHSearch 84.7234% -92 - C1 -3NPK 3.6 ?
3 PsiBlast_PDB 84.4834%-109 - C1 -2J1P 8.0 GGPPS_SINAL
52 PsiBlast_CBE 81.3133%-100 - C1 -3Q1O 3.6 ?
50 PsiBlast_CBE 81.1533%-101 - C1 -3Q1O 3.5 ?
51 PsiBlast_CBE 80.6833% -96 - C1 -3Q1O 3.4 ?
49 PsiBlast_CBE 80.4833% -96 - C1 -3Q1O 3.4 ?