@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Wbm0764: (2015-12-04 )
MESNYNADAIKILRGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDESLAGYCDKIEVSINEDGSVSVTDNGRGIPTDIHKEEGISAAEVIMTQLHAGGKFDSNTYKVSGGLHGVGISVVNALSSWLELTIWRNKKEHFMRFEDGESIEPLKIVNKNTNKRGTRVTFMPSTETFSSIDFSYSTLENRIRELAFLNSSINITLRDLRNKPYIESHFNDSKQSKDNFGTANFVRYLDKNKTHVTKITSMKGDAKDLGISIEISMEWNDSYYEHMLCFTNNIRQRDGGTHLAGFRSALTRCINNYATDEGFLKKAKVSLTGEDVREGLTCVLSLKMPDPKFSSQTKDKLVSSEARTVVESIVFDKLSTILETDPKLAASIVERVIRSAKGREAARKARELVKNKNSIDISTLPGKLADCQEKVPELSELFIVEGNSAGGTAKQGRNRKTQAVLALRGKILNVERVSLDRIFSSAEIGSLITAIGAGIGSEHFDIEKTRYHKIIIMTDADVDGSHIRTLILTFFFRYMREVIERGYLYIAQPPLYKVTKNAEDTYIKDDETFEKYIVNLAVKKLTLNSTGRGLRFILSKCLSISNISKNYSRGIPQNLLESLLILSKKNALSSANEILKYLKLMYSEYNWEVEIKDEEREVHISKLFQGLADKYVFPLSMLDSKEIRNILSSLDDVIDLFNGDSFLKSQETEIKIRSPSALAKIVMDYGKKGLTLQRFKGLGEMNADQLWDTTLNPETRTLLKVEIKDCEEADSIFSVLMGDIVEPRRNFINNNALNVYDVDI

Atome Classification :

(54 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




DOO_B_7(4KFG)
GYRB_ECOLI
[Raw transfer]




DOO_B_12(4KQV)
?
[Raw transfer]




DOO_A_5(4KFG)
GYRB_ECOLI
[Raw transfer]




ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




RLI_B_4(4DUH)
GYRB_ECOLI
[Raw transfer]




ANP_A_7(1S16)
PARE_ECOLI
[Raw transfer]




ANP_A_7(1S16)
PARE_ECOLI
[Raw transfer]




ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




ANP_B_7(1EI1)
GYRB_ECOLI
[Raw transfer]




2B7_A_2(4MOT)
?
[Raw transfer]




ANP_B_8(1S16)
PARE_ECOLI
[Raw transfer]




RLI_A_3(4DUH)
GYRB_ECOLI
[Raw transfer]




1YP_A_2(4LPB)
?
[Raw transfer]




28G_A_2(4MBC)
?
[Raw transfer]




B46_A_2(3G7E)
GYRB_ECOLI
[Raw transfer]




XAM_C_7(4URM)
?
[Raw transfer]




28F_A_3(4MB9)
?
[Raw transfer]




1A1_C_9(4HYP)
GYRB_ECOLI
[Raw transfer]




1A1_D_11(4HYP)
GYRB_ECOLI
[Raw transfer]




NOV_C_7(4URO)
GYRB_STAAU
[Raw transfer]




1A1_B_7(4HYP)
GYRB_ECOLI
[Raw transfer]




NOV_D_8(4URO)
GYRB_STAAU
[Raw transfer]




NOV_A_3(1KIJ)
?
[Raw transfer]




NOV_B_6(4URO)
GYRB_STAAU
[Raw transfer]




CBN_A_2(1KZN)
GYRB_ECOLI
[Raw transfer]




XAM_B_6(4URM)
?
[Raw transfer]




1A1_A_5(4HYP)
GYRB_ECOLI
[Raw transfer]




TTJ_A_2(5BOD)
?
[Raw transfer]




NOV_B_2(1AJ6)
GYRB_ECOLI
[Raw transfer]




XAM_A_5(4URM)
?
[Raw transfer]




XAM_D_8(4URM)
?
[Raw transfer]




NOV_C_6(4URN)
?
[Raw transfer]




NOV_A_4(4URN)
?
[Raw transfer]




NOV_A_5(4URO)
GYRB_STAAU
[Raw transfer]




NOV_B_5(4URN)
?
[Raw transfer]




0RA_A_2(4EM7)
?
[Raw transfer]




RWX_B_8(4BAE)
GYRB_MYCSM
[Raw transfer]




4S4_A_2(4ZVI)
?
[Raw transfer]




1 PsiBlast_PDB 87.5649% -96 - C3 -4I3H - ? -
9 PsiBlast_PDB 80.6558% -74 - C2 -4ZVI 5.7 ?
136 Fugue 80.5157% -64 - C2 -1EI1 8.3 GYRB_ECOLI
135 Fugue 80.3757% -64 - C2 -1EI1 8.3 GYRB_ECOLI
3 PsiBlast_PDB 79.8357% -64 - C2 -4WUB - GYRB_ECOLI -
5 PsiBlast_PDB 79.6557% -64 - C2 -4WUD - GYRB_ECOLI -
6 PsiBlast_PDB 79.5658% -63 - C2 -4PRV - GYRB_ECOLI -
4 PsiBlast_PDB 79.4057% -62 - C2 -4WUC - GYRB_ECOLI -
2 PsiBlast_PDB 79.3557% -64 - C2 -4XTJ - GYRB_ECOLI -
8 PsiBlast_PDB 78.0358% -63 - C2 -1EI1 - GYRB_ECOLI -
11 PsiBlast_PDB 77.9142% -67 - C2 -3ZKB - GYRB_MYCTU -
116 HHSearch 77.6645% -70 - C2 -1KIJ 6.3 ?
43 PsiBlast_CBE 77.4442% -67 - C2 -3ZKB - GYRB_MYCTU -
21 PsiBlast_CBE 77.4058% -65 - C2 -1EI1 8.5 GYRB_ECOLI
7 PsiBlast_PDB 77.2658% -60 - C2 -4PU9 - GYRB_ECOLI -
25 PsiBlast_CBE 76.9942% -66 - C2 -3ZKD - GYRB_MYCTU -
29 PsiBlast_CBE 76.8442% -64 - C2 -3ZKD - GYRB_MYCTU -
44 PsiBlast_CBE 76.7442% -68 - C2 -1KIJ - ? -
26 PsiBlast_CBE 76.6842% -63 - C2 -3ZKD - GYRB_MYCTU -
28 PsiBlast_CBE 76.3942% -63 - C2 -3ZKD - GYRB_MYCTU -
55 PsiBlast_CBE 69.6736% -60 - C2 -1S16 10.0 PARE_ECOLI
117 HHSearch 69.4736% -61 - C2 -1S16 9.8 PARE_ECOLI
56 PsiBlast_CBE 68.9336% -60 - C2 -1S16 9.8 PARE_ECOLI
15 PsiBlast_PDB 59.1862% -70 - C2 -1AJ6 5.6 GYRB_ECOLI
48 PsiBlast_CBE 56.9165% -74 - C2 -4HYP 7.1 GYRB_ECOLI
16 PsiBlast_PDB 56.1665% -61 - C2 -3G7E 7.0 GYRB_ECOLI
14 PsiBlast_PDB 56.0863% -64 - C2 -4DUH 6.8 GYRB_ECOLI
19 PsiBlast_PDB 56.0365% -71 - C2 -1KZN 8.6 GYRB_ECOLI
45 PsiBlast_CBE 55.8763% -65 - C2 -4DUH 7.2 GYRB_ECOLI
47 PsiBlast_CBE 55.6865% -72 - C2 -4HYP 7.4 GYRB_ECOLI
49 PsiBlast_CBE 55.0665% -72 - C2 -4HYP 6.8 GYRB_ECOLI
17 PsiBlast_PDB 54.3765% -71 - C2 -4HYP 6.9 GYRB_ECOLI
18 PsiBlast_PDB 54.1165% -69 - C2 -4KFG 7.6 GYRB_ECOLI
52 PsiBlast_CBE 52.7155% -70 - C2 -4MBC 5.7 ?
46 PsiBlast_CBE 52.4165% -64 - C2 -4KFG 7.5 GYRB_ECOLI
53 PsiBlast_CBE 52.3355% -69 - C2 -4MB9 4.0 ?
54 PsiBlast_CBE 51.7455% -69 - C2 -4LPB 6.6 ?
20 PsiBlast_PDB 51.7155% -68 - C2 -4EM7 5.1 ?
51 PsiBlast_CBE 51.5555% -69 - C2 -4MOT 5.7 ?
50 PsiBlast_CBE 51.3855% -69 - C2 -5BOD 4.9 ?
96 PsiBlast_CBE 51.0055% -60 - C2 -4URM 9.6 ?
89 PsiBlast_CBE 49.8555% -66 - C2 -4URO 6.0 GYRB_STAAU
92 PsiBlast_CBE 48.7855% -58 - C2 -4URO 5.1 GYRB_STAAU
90 PsiBlast_CBE 48.6255% -59 - C2 -4URO 5.8 GYRB_STAAU
95 PsiBlast_CBE 48.5955% -62 - C2 -4URM 9.3 ?
91 PsiBlast_CBE 48.4855% -56 - C2 -4URO 6.3 GYRB_STAAU
93 PsiBlast_CBE 48.3555% -61 - C2 -4URM 9.2 ?
94 PsiBlast_CBE 48.0555% -63 - C2 -4URM 8.6 ?
76 PsiBlast_CBE 46.7148% -69 - C2 -4BAE 7.2 GYRB_MYCSM
73 PsiBlast_CBE 45.4952% -53 - C2 -4URN 5.0 ?
75 PsiBlast_CBE 45.3252% -61 - C2 -4URN 5.1 ?
74 PsiBlast_CBE 45.2052% -53 - C2 -4URN 5.6 ?
63 PsiBlast_CBE 43.0133% -57 - C2 -4KQV 6.6 ?
139 Fugue 40.6352% -47 - C2 -1EI1 Error GYRB_ECOLI