@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Wbm0773: (2015-12-04 )
MKFQLVTHFQPAGDQPQAIDSLVAGLNDNKRDQVLLGVTGSGKTFTMANVIARTNRPALIIAHNKTLAAQLYEEMKGFFPHNAVEYFISYYDYYQPEAYLPQTDTYIEKDSVINERIDMLRYSAVCSLLERRDTIVVASVSCIYGLGSPESYLSMTITLSTGDRIRINDFLNDLANLQYKRSDIRFERGYFRMRGDVIDIFPAYYEDKAWRLLLIGNEIEGISEINAITGNIIKCIDKITIFPNSYHITSRETLLRAVQPIREELNERLDYYYSQNKIVEAQRLEQRTNFDIEMMVATGTCKGIENYSRYLYGMEAGDAPPTLFEYLPEDVILFVDESHVTVPQIGAMYNGNESRKKKLIDHGFRLPSAFDNRPLKFKEWESMRPQTIYISATPGKYELARTNNLFVEQVIRPTGITDPICIVKPAEAQVYDVVHEAQVTIKRGFCVLITTLTKKMAEKLAEHMSELNMKVSYLHSDISALERIDIVYKLRSKEIDVLIGVNLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAARNAESRAILYADKVTGSMDRALKETERRRKKQKKYSVLHNVLPKTIIKPISNTLKEKVVVKVTTIGMNKDTVSSLRKQMLAHAKNLEFEEAAKIKNIIGRINNL

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FLQ_C_5(2FDC)
UVRB_BACCA
[Raw transfer]



NACID_C_1(2FDC)
UVRB_BACCA
[Raw transfer]
-
NACID_D_2(2FDC)
UVRB_BACCA
[Raw transfer]
-
NACID_D_1(2NMV)
?
[Raw transfer]
-
NACID_D_1(2D7D)
UVRB_BACSU
[Raw transfer]
-
NACID_D_1(2D7D)
UVRB_BACSU
[Raw transfer]
-
CHAIN_C_3(3V4R)
?
[Raw transfer]
-
CHAIN_D_4(3V4R)
UVRB_BACSU
[Raw transfer]
-
37 HHSearch 97.2354%-101 - C5 -2D7D 8.5 UVRB_BACSU
1 PsiBlast_PDB 96.7253%-101 - C5 -2D7D 8.5 UVRB_BACSU
2 PsiBlast_PDB 96.3153%-101 - C5 -2NMV 8.1 ?
23 PsiBlast_CBE 92.6753% -99 - C5 -1T5L - UVRB_BACCA -
6 PsiBlast_PDB 92.5353% -98 - C5 -1T5L - UVRB_BACCA -
5 PsiBlast_PDB 91.8854% -98 - C5 -3UWX - ? -
22 PsiBlast_CBE 91.0354%-101 - C5 -2FDC 13.0 UVRB_BACCA
21 PsiBlast_CBE 89.8953%-101 - C5 -3V4R 13.7 ?
3 PsiBlast_PDB 89.8953%-101 - C5 -3V4R 10.6 UVRB_BACSU
62 Fugue 89.1551% -96 - C5 -1D2M - UVRB_THET8 -
8 PsiBlast_PDB 87.2054% -89 - C5 -1D9X - UVRB_BACCA -
4 PsiBlast_PDB 86.8154% -92 - C5 -2FDC 11.0 UVRB_BACCA
7 PsiBlast_PDB 86.4654% -86 - C5 -1D9Z - UVRB_BACCA -
63 Fugue 86.0455% -87 - C5 -1D9X - UVRB_BACCA -
64 Fugue 70.8255% -95 - C5 -1D9X - UVRB_BACCA -
66 Fugue 57.7718% -72 - C5 -2EYQ - MFD_ECOLI -
65 Fugue 55.2218% -86 - C5 -3HJH - MFD_ECOLI -
39 HHSearch 50.8215% -76 * C5 *3HJH - MFD_ECOLI -
12 PsiBlast_PDB 50.0020% -95 - C5 -2B2N - MFD_ECOLI -
10 PsiBlast_PDB 49.8920%-105 - C5 -3HJH - MFD_ECOLI -