@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Wbm0787: (2015-12-04 )
MNPIICALDTQDLNEAISLANTLRDKVGMIKLGLEFFAAHGPSGVREVAKCNVPTFLDLKLHDIPNTVAKTVEAIKVLNIEILTLHISGGTKMLEEALSIVKDTKTKLIGVTVLTSMSNEDLSELGIAREVKSQVILFAKLAKKVGLHGIVCSALEAQEVYQECGKDFKIITSGIRVGFGHDDQKRTATPKEAINSGADYIVIGRPITKSNSPANSAELILKSLS

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

BMQ_E_5(1EIX)
PYRF_ECOLI
[Raw transfer]




BMQ_E_5(1EIX)
PYRF_ECOLI
[Raw transfer]




BMQ_G_7(1EIX)
PYRF_ECOLI
[Raw transfer]




BMQ_H_8(1EIX)
PYRF_ECOLI
[Raw transfer]




BMQ_F_6(1EIX)
PYRF_ECOLI
[Raw transfer]




U5P_A_3(3UWQ)
PYRF_VIBCH
[Raw transfer]




U5P_H_8(1DBT)
PYRF_BACSU
[Raw transfer]




U5P_B_9(3UWQ)
PYRF_VIBCH
[Raw transfer]




C5P_A_3(2YYU)
PYRF_GEOKA
[Raw transfer]




C5P_B_4(2YYU)
PYRF_GEOKA
[Raw transfer]




C5P_A_3(2YYU)
PYRF_GEOKA
[Raw transfer]




U5P_E_5(1DBT)
PYRF_BACSU
[Raw transfer]




U5P_E_5(1DBT)
PYRF_BACSU
[Raw transfer]




U5P_G_7(1DBT)
PYRF_BACSU
[Raw transfer]




U5P_E_5(1DBT)
PYRF_BACSU
[Raw transfer]




GOL_A_3(3VE9)
?
[Raw transfer]




EDO_A_4(1VQT)
PYRF_THEMA
[Raw transfer]




EDO_A_9(1VQT)
PYRF_THEMA
[Raw transfer]




XPE_A_4(3UWQ)
PYRF_VIBCH
[Raw transfer]




PGE_A_7(3UWQ)
PYRF_VIBCH
[Raw transfer]




37 HHSearch 95.5443%-123 - C3 -3LDV - PYRF_VIBCH -
1 PsiBlast_PDB 95.1043%-124 - C3 -3LDV - PYRF_VIBCH -
2 PsiBlast_PDB 94.2643%-126 - C3 -3UWQ 5.6 PYRF_VIBCH
21 PsiBlast_CBE 93.6943%-126 - C3 -3UWQ 5.8 PYRF_VIBCH
22 PsiBlast_CBE 92.9043%-125 - C3 -3LDV - PYRF_VIBCH -
23 PsiBlast_CBE 91.8840%-115 - C3 -1EIX 6.4 PYRF_ECOLI
3 PsiBlast_PDB 91.6240%-111 - C3 -1EIX 6.9 PYRF_ECOLI
25 PsiBlast_CBE 91.4240%-113 - C3 -1EIX 6.6 PYRF_ECOLI
4 PsiBlast_PDB 90.6640%-120 - C3 -1L2U - PYRF_ECOLI -
33 HHSearch 90.5940%-111 - C3 -1EIX 6.9 PYRF_ECOLI
6 PsiBlast_PDB 90.2539%-114 - C3 -1JJK - PYRF_ECOLI -
24 PsiBlast_CBE 90.2440%-111 - C3 -1EIX 6.6 PYRF_ECOLI
53 Fugue 86.6336%-112 - C3 -1DBT 6.5 PYRF_BACSU
9 PsiBlast_PDB 85.0136%-122 - C3 -2YYU 4.2 PYRF_GEOKA
27 PsiBlast_CBE 84.9036%-108 - C3 -1DBT 6.5 PYRF_BACSU
7 PsiBlast_PDB 84.2036%-106 - C3 -1DBT - PYRF_BACSU -
54 Fugue 84.0035%-114 - C3 -1DBT 6.5 PYRF_BACSU
26 PsiBlast_CBE 83.1936%-105 - C3 -1DBT 7.1 PYRF_BACSU
28 PsiBlast_CBE 82.7036%-119 - C3 -2YYU 3.8 PYRF_GEOKA
8 PsiBlast_PDB 82.1836%-126 - C3 -2YYT - PYRF_GEOKA -
32 HHSearch 80.6432%-119 - C3 -2YYU 4.3 PYRF_GEOKA
34 HHSearch 80.1432%-112 - C3 -1DBT 6.6 PYRF_BACSU