@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA0002: (2016-03-11 )
MMEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPKTVDGEDIVNISETGSVVLPGRFFVDIIKKLPGKDVKLSTNEQFQTLITSGHSEFNLSGLDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENELICTATDSHRLAVRKLQLEDVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKVGNVNFISRLLEGHYPDTTRLFPENYEIKLSIDNGEFYHAIDRASLLAREGGNNVIKLSTGDDVVELSSTSPEIGTVKEEVDANDVEGGSLKISFNSKYMMDALKAIDNDEVEVEFFGTMKPFILKPKGDDSVTQLILPIRTY

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

323_P_5(3D1F)
DPO3B_ECOLI
[Raw transfer]




LEU_A_3(4K3L)
DPO3B_ECOLI
[Raw transfer]




PHE_A_4(4K3L)
DPO3B_ECOLI
[Raw transfer]




ACE_A_11(4K3L)
DPO3B_ECOLI
[Raw transfer]




2 PsiBlast_PDB 95.8139%-110 - C2 -2AVT - ? -
23 HHSearch 95.4839%-108 - C2 -2AVT - ? -
1 PsiBlast_PDB 95.3040%-104 - C2 -2AWA - DPO3B_STRPN -
24 HHSearch 91.2834%-110 - C2 -3T0P - ? -
3 PsiBlast_PDB 86.3333%-108 - C2 -3T0P - ? -
13 PsiBlast_PDB 85.8426%-101 - C2 -3D1F Error DPO3B_ECOLI
9 PsiBlast_PDB 85.4126% -99 - C2 -1UNN - DPO3B_ECOLI -
15 PsiBlast_PDB 85.0626% -97 - C2 -3Q4J - DPO3B_ECOLI -
8 PsiBlast_PDB 85.0626% -96 - C2 -1MMI - DPO3B_ECOLI -
10 PsiBlast_PDB 85.0226% -97 - C2 -1OK7 - DPO3B_ECOLI -
19 PsiBlast_PDB 84.7826%-100 - C2 -4K3M - DPO3B_ECOLI -
7 PsiBlast_PDB 84.7026% -99 - C2 -2POL - DPO3B_ECOLI -
5 PsiBlast_PDB 84.6626% -96 - C2 -3PWE - DPO3B_ECOLI -
20 PsiBlast_PDB 84.6026%-101 - C2 -4K3O - DPO3B_ECOLI -
12 PsiBlast_PDB 84.3926% -97 - C2 -3D1E - DPO3B_ECOLI -
16 PsiBlast_PDB 84.3726%-105 - C2 -3Q4K - DPO3B_ECOLI -
18 PsiBlast_PDB 84.1726%-105 - C2 -4K3L 3.7 DPO3B_ECOLI
6 PsiBlast_PDB 83.8426% -95 - C2 -3QSB - DPO3B_ECOLI -
14 PsiBlast_PDB 83.6326% -98 - C2 -3D1G - DPO3B_ECOLI -
17 PsiBlast_PDB 83.4526% -98 - C2 -4K3K - DPO3B_ECOLI -