@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA0005: (2016-03-11 )
MVTALSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYANKIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLHGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVGTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEVEIAIQYNSGYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRELDKLKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNAVYANLDF

Atome Classification :

(69 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

XAM_C_7(4URM)
?
[Raw transfer]




DOO_A_2(4K4O)
?
[Raw transfer]




920_A_2(4KSG)
?
[Raw transfer]




DOO_A_5(4KFG)
GYRB_ECOLI
[Raw transfer]




XAM_B_6(4URM)
?
[Raw transfer]




DOO_B_7(4KFG)
GYRB_ECOLI
[Raw transfer]




XAM_A_5(4URM)
?
[Raw transfer]




XAM_D_8(4URM)
?
[Raw transfer]




ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




NOV_C_7(4URO)
GYRB_STAAU
[Raw transfer]




ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




ANP_A_7(1S16)
PARE_ECOLI
[Raw transfer]




ANP_A_7(1S16)
PARE_ECOLI
[Raw transfer]




ANP_B_7(1EI1)
GYRB_ECOLI
[Raw transfer]




1A0_A_2(4HXW)
?
[Raw transfer]




ANP_B_8(1S16)
PARE_ECOLI
[Raw transfer]




087_B_7(3U2K)
GYRB_STAAU
[Raw transfer]




NOV_B_6(4URO)
GYRB_STAAU
[Raw transfer]




07N_A_3(3TTZ)
GYRB_STAAU
[Raw transfer]




NOV_A_3(1KIJ)
?
[Raw transfer]




B47_A_3(3G7B)
GYRB_STAAU
[Raw transfer]




087_A_3(3U2K)
GYRB_STAAU
[Raw transfer]




1YP_A_2(4LPB)
?
[Raw transfer]




NOV_D_8(4URO)
GYRB_STAAU
[Raw transfer]




B47_B_4(3G7B)
GYRB_STAAU
[Raw transfer]




NOV_A_3(1KIJ)
?
[Raw transfer]




RLI_B_4(4DUH)
GYRB_ECOLI
[Raw transfer]




NOV_A_5(4URO)
GYRB_STAAU
[Raw transfer]




RLI_A_3(4DUH)
GYRB_ECOLI
[Raw transfer]




08B_A_3(3U2D)
GYRB_STAAU
[Raw transfer]




28F_A_3(4MB9)
?
[Raw transfer]




28G_A_2(4MBC)
?
[Raw transfer]




2B7_A_2(4MOT)
?
[Raw transfer]




883_A_3(4P8O)
GYRB_STAAR
[Raw transfer]




883_B_4(4P8O)
GYRB_STAAR
[Raw transfer]




08B_B_6(3U2D)
GYRB_STAAU
[Raw transfer]




07N_B_6(3TTZ)
GYRB_STAAU
[Raw transfer]




1A1_D_11(4HYP)
GYRB_ECOLI
[Raw transfer]




RWX_B_8(4BAE)
GYRB_MYCSM
[Raw transfer]




B48_A_3(3G75)
GYRB_STAAU
[Raw transfer]




1A1_C_9(4HYP)
GYRB_ECOLI
[Raw transfer]




NOV_B_2(1AJ6)
GYRB_ECOLI
[Raw transfer]




B48_B_4(3G75)
GYRB_STAAU
[Raw transfer]




1EU_A_3(3FV5)
PARE_ECOLI
[Raw transfer]




NOV_A_4(4URN)
?
[Raw transfer]




0RA_A_2(4EM7)
?
[Raw transfer]




NOV_C_6(4URN)
?
[Raw transfer]




NOV_B_5(4URN)
?
[Raw transfer]




NOV_B_4(1KIJ)
?
[Raw transfer]




TTJ_A_2(5BOD)
?
[Raw transfer]




1A1_B_7(4HYP)
GYRB_ECOLI
[Raw transfer]




1A1_A_5(4HYP)
GYRB_ECOLI
[Raw transfer]




4S4_A_2(4ZVI)
?
[Raw transfer]




1 PsiBlast_PDB 89.4351% -92 - C3 -4I3H - ? -
2 PsiBlast_PDB 86.9351% -94 - C3 -4JUO - PARE_STRPN -
111 Fugue 68.7452% -60 - C2 -1EI1 8.5 GYRB_ECOLI
112 Fugue 68.7352% -60 - C2 -1EI1 8.5 GYRB_ECOLI
14 PsiBlast_PDB 68.3751% -63 - C2 -4WUD - GYRB_ECOLI -
17 PsiBlast_PDB 67.9952% -62 - C2 -1EI1 - GYRB_ECOLI -
15 PsiBlast_PDB 67.7852% -67 - C2 -4PRV - GYRB_ECOLI -
18 PsiBlast_PDB 67.4952% -71 - C2 -4ZVI 5.7 ?
55 PsiBlast_CBE 67.2352% -63 - C2 -1EI1 8.8 GYRB_ECOLI
13 PsiBlast_PDB 67.1551% -64 - C2 -4WUC - GYRB_ECOLI -
12 PsiBlast_PDB 67.0251% -62 - C2 -4WUB - GYRB_ECOLI -
49 PsiBlast_CBE 66.8948% -64 - C2 -3ZKB - GYRB_MYCTU -
11 PsiBlast_PDB 66.8051% -63 - C2 -4XTJ - GYRB_ECOLI -
32 PsiBlast_CBE 66.6848% -62 - C2 -3ZKD - GYRB_MYCTU -
33 PsiBlast_CBE 66.4148% -71 - C2 -3ZKD - GYRB_MYCTU -
6 PsiBlast_PDB 66.2648% -66 - C2 -3ZKB - GYRB_MYCTU -
37 PsiBlast_CBE 65.9748% -64 - C2 -3ZKD - GYRB_MYCTU -
51 PsiBlast_CBE 65.8848% -64 - C2 -3ZKB - GYRB_MYCTU -
50 PsiBlast_CBE 65.8248% -65 - C2 -3ZKB - GYRB_MYCTU -
125 HHSearch 65.4645% -68 - C2 -1KIJ 7.0 ?
60 PsiBlast_CBE 65.0544% -69 - C2 -1KIJ 8.3 ?
61 PsiBlast_CBE 63.8844% -69 - C2 -1KIJ 7.0 ?
4 PsiBlast_PDB 60.0299% -74 - C2 -4URM 11.0 ?
127 HHSearch 60.0037% -65 - C2 -1S16 9.9 PARE_ECOLI
29 PsiBlast_CBE 59.3099% -74 - C2 -4URM 10.8 ?
93 PsiBlast_CBE 58.5238% -59 - C2 -1S16 9.9 PARE_ECOLI
92 PsiBlast_CBE 57.9038% -60 - C2 -1S16 10.3 PARE_ECOLI
26 PsiBlast_CBE 57.1099% -73 - C2 -4URO 6.7 GYRB_STAAU
28 PsiBlast_CBE 57.0499% -75 - C2 -4URM 8.6 ?
5 PsiBlast_PDB 55.9699% -74 - C2 -4URO 6.4 GYRB_STAAU
24 PsiBlast_CBE 55.8899% -76 - C2 -4URO 5.9 GYRB_STAAU
9 PsiBlast_PDB 55.6889% -69 - C2 -3U2D 5.5 GYRB_STAAU
25 PsiBlast_CBE 55.6599% -72 - C2 -4URO 6.0 GYRB_STAAU
54 PsiBlast_CBE 55.5289% -69 - C2 -3TTZ 6.2 GYRB_STAAU
56 PsiBlast_CBE 55.3588% -74 - C2 -4P8O 7.2 GYRB_STAAR
27 PsiBlast_CBE 55.0399% -73 - C2 -4URM 9.8 ?
8 PsiBlast_PDB 55.0189% -69 - C2 -3TTZ 6.2 GYRB_STAAU
10 PsiBlast_PDB 54.5289% -68 - C2 -3U2K 6.5 GYRB_STAAU
19 PsiBlast_PDB 54.2588% -73 - C2 -4P8O 7.2 GYRB_STAAR
52 PsiBlast_CBE 54.2189% -69 - C2 -3U2K 7.0 GYRB_STAAU
107 PsiBlast_CBE 54.0255% -77 - C2 -4MB9 4.7 ?
57 PsiBlast_CBE 53.6888% -73 - C2 -3G7B 5.9 GYRB_STAAU
94 PsiBlast_CBE 53.6156% -72 - C2 -1AJ6 5.5 GYRB_ECOLI
58 PsiBlast_CBE 53.5988% -68 - C2 -3G7B 5.5 GYRB_STAAU
53 PsiBlast_CBE 53.2989% -70 - C2 -3U2D 5.7 GYRB_STAAU
59 PsiBlast_CBE 53.1488% -73 - C2 -3G75 4.1 GYRB_STAAU
100 PsiBlast_CBE 52.9258% -75 - C2 -4HYP 6.7 GYRB_ECOLI
104 PsiBlast_CBE 52.5255% -78 - C2 -5BOD 5.1 ?
105 PsiBlast_CBE 52.5155% -78 - C2 -4MOT 5.0 ?
116 Fugue 52.3956% -62 - C2 -1EI1 7.7 GYRB_ECOLI
20 PsiBlast_PDB 52.3988% -67 - C2 -3G75 4.1 GYRB_STAAU
106 PsiBlast_CBE 52.2755% -76 - C2 -4MBC 5.1 ?
109 PsiBlast_CBE 52.2655% -77 - C2 -4EM7 5.0 ?
101 PsiBlast_CBE 52.2558% -76 - C2 -4HYP 7.0 GYRB_ECOLI
108 PsiBlast_CBE 51.8355% -75 - C2 -4LPB 6.4 ?
102 PsiBlast_CBE 50.9958% -75 - C2 -4HYP 6.8 GYRB_ECOLI
97 PsiBlast_CBE 50.6766% -71 - C2 -4HXW 6.8 ?
86 PsiBlast_CBE 50.6460% -71 - C2 -4URN 5.2 ?
110 PsiBlast_CBE 50.5358% -74 - C2 -4BAE 7.6 GYRB_MYCSM
88 PsiBlast_CBE 50.3360% -75 - C2 -4URN 5.1 ?
95 PsiBlast_CBE 50.2366% -68 - C2 -4KSG 7.9 ?
99 PsiBlast_CBE 50.2158% -69 - C2 -4KFG 7.4 GYRB_ECOLI
98 PsiBlast_CBE 50.0058% -67 - C2 -4KFG 7.5 GYRB_ECOLI
96 PsiBlast_CBE 49.9166% -69 - C2 -4K4O 7.8 ?
90 PsiBlast_CBE 49.8556% -71 - C2 -4DUH 7.1 GYRB_ECOLI
103 PsiBlast_CBE 49.8158% -75 - C2 -4HYP 7.1 GYRB_ECOLI
91 PsiBlast_CBE 49.0856% -65 - C2 -4DUH 6.6 GYRB_ECOLI
87 PsiBlast_CBE 47.7160% -64 - C2 -4URN 5.5 ?
134 HHSearch 46.7447% -72 * C2 *3FV5 5.6 PARE_ECOLI