@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA0006: (2016-03-11 )
MAELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDAEDETNEDEQSTSTVSEDGTEQQREAVVNDETPGNAIHTEVIDSEENDEDGRIEVRQDFMDRVEEDIQQSSDEDEE

Atome Classification :

(44 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_C_3(4GFH)
TOP2_YEAST
[Raw transfer]
-
NACID_H_8(4GFH)
TOP2_YEAST
[Raw transfer]
-
GOL_B_8(3ILW)
GYRA_MYCTU
[Raw transfer]



GOL_A_4(3ILW)
GYRA_MYCTU
[Raw transfer]



GOL_A_4(3ILW)
GYRA_MYCTU
[Raw transfer]



NACID_H_8(3LTN)
PARC_STRPN
[Raw transfer]
-
NACID_H_8(3RAF)
PARC_STRPN
[Raw transfer]
-
NACID_H_8(3RAE)
PARC_STRPN
[Raw transfer]
-
CHAIN_H_8(4KPE)
PARC_STRPN
[Raw transfer]
-
CHAIN_H_8(4KOE)
PARC_STRPN
[Raw transfer]
-
SM8_B_8(2Y3P)
GYRA_ECOLI
[Raw transfer]



SM8_A_5(2Y3P)
GYRA_ECOLI
[Raw transfer]



NACID_H_8(3RAD)
PARC_STRPN
[Raw transfer]
-
NACID_H_8(3K9F)
PARC_STRPN
[Raw transfer]
-
CHAIN_H_8(4KPF)
PARC_STRPN
[Raw transfer]
-
NACID_H_8(3KSA)
PARC_STRPN
[Raw transfer]
-
MPD_B_5(3IFZ)
GYRA_MYCTU
[Raw transfer]



MPD_A_3(3IFZ)
GYRA_MYCTU
[Raw transfer]



MFX_H_10(3FOF)
PARC_STRPN
[Raw transfer]



NACID_F_4(2XCR)
GYRA_STAAN
[Raw transfer]
-
NACID_F_6(3RAF)
PARC_STRPN
[Raw transfer]
-
NACID_F_4(2XCR)
GYRA_STAAN
[Raw transfer]
-
NACID_F_6(3RAE)
PARC_STRPN
[Raw transfer]
-
NACID_F_6(3K9F)
PARC_STRPN
[Raw transfer]
-
CHAIN_F_6(4KPE)
PARC_STRPN
[Raw transfer]
-
NACID_F_6(3RAD)
PARC_STRPN
[Raw transfer]
-
NACID_W_8(2XCR)
GYRA_STAAN
[Raw transfer]
-
NACID_W_8(2XCR)
GYRA_STAAN
[Raw transfer]
-
NACID_F_6(3LTN)
PARC_STRPN
[Raw transfer]
-
CHAIN_F_6(4KOE)
PARC_STRPN
[Raw transfer]
-
CHAIN_F_6(4KPF)
PARC_STRPN
[Raw transfer]
-
NACID_G_5(4I3H)
?
[Raw transfer]
-
NACID_E_5(3KSB)
PARC_STRPN
[Raw transfer]
-
NACID_E_5(3FOF)
PARC_STRPN
[Raw transfer]
-
NACID_F_6(3KSA)
PARC_STRPN
[Raw transfer]
-
NACID_E_5(3KSB)
PARC_STRPN
[Raw transfer]
-
CHAIN_D_2(2RGR)
TOP2_YEAST
[Raw transfer]
-
NACID_E_5(3FOE)
PARC_STRPN
[Raw transfer]
-
21 PsiBlast_CBE 91.9999% -85 - C7 -2XCR 3.8 GYRA_STAAN (first)
23 PsiBlast_CBE 91.4999% -80 - C7 -2XCR 5.3 GYRA_STAAN (first)
1 PsiBlast_PDB 91.0299% -82 - C7 -2XCR 4.4 GYRA_STAAN (first)
22 PsiBlast_CBE 90.7499% -79 - C7 -2XCR 4.6 GYRA_STAAN (first)
25 PsiBlast_CBE 81.6070% -72 - C7 -4DDQ - GYRA_BACSU -
24 PsiBlast_CBE 81.6070% -74 - C7 -4DDQ - GYRA_BACSU -
2 PsiBlast_PDB 81.3370% -73 - C7 -4DDQ - GYRA_BACSU -
51 HHSearch 80.8538% -79 - C8 -1ZVU - PARC_ECOLI -
4 PsiBlast_PDB 79.1956% -76 - C7 -4TMA - ? -
10 PsiBlast_PDB 79.1739% -85 - C8 -1ZVU - PARC_ECOLI -
27 PsiBlast_CBE 79.1456% -81 - C7 -4TMA - ? -
26 PsiBlast_CBE 78.9256% -80 - C7 -2Y3P 2.7 GYRA_ECOLI (first)
3 PsiBlast_PDB 78.7056% -77 - C7 -2Y3P 2.6 GYRA_ECOLI (first)
54 HHSearch 78.2057% -75 - C7 -3ILW 2.7 GYRA_MYCTU
7 PsiBlast_PDB 77.8856% -75 - C7 -3IFZ 3.6 GYRA_MYCTU
8 PsiBlast_PDB 77.8056% -75 - C7 -3ILW 2.7 GYRA_MYCTU
29 PsiBlast_CBE 77.7956% -72 - C7 -3ILW 2.8 GYRA_MYCTU
30 PsiBlast_CBE 77.7544% -75 - C7 -4I3H 6.3 ?
28 PsiBlast_CBE 77.6856% -74 - C7 -3IFZ 3.2 GYRA_MYCTU
35 PsiBlast_CBE 77.4444% -73 - C7 -4KOE 4.2 PARC_STRPN
32 PsiBlast_CBE 77.4444% -73 - C7 -4KPF 4.1 PARC_STRPN
20 PsiBlast_PDB 77.4244% -72 - C7 -4KOE 4.0 PARC_STRPN
19 PsiBlast_PDB 77.2544% -73 - C7 -3RAE 4.7 PARC_STRPN
38 PsiBlast_CBE 77.2244% -76 - C7 -3RAD 3.3 PARC_STRPN
34 PsiBlast_CBE 77.1844% -73 - C7 -4KPE 3.5 PARC_STRPN
36 PsiBlast_CBE 77.1444% -73 - C7 -3RAF 3.5 PARC_STRPN
17 PsiBlast_PDB 77.0144% -70 - C7 -3RAF 3.9 PARC_STRPN
15 PsiBlast_PDB 76.9444% -76 - C7 -3KSB 4.5 PARC_STRPN
40 PsiBlast_CBE 76.9144% -75 - C7 -3KSB 4.7 PARC_STRPN
16 PsiBlast_PDB 76.8844% -71 - C7 -3LTN 3.6 PARC_STRPN
14 PsiBlast_PDB 76.8844% -75 - C7 -3KSA 4.5 PARC_STRPN
37 PsiBlast_CBE 76.8244% -73 - C7 -3RAE 4.0 PARC_STRPN
41 PsiBlast_CBE 76.7844% -75 - C7 -3KSA 4.1 PARC_STRPN
39 PsiBlast_CBE 76.7144% -71 - C7 -3LTN 3.4 PARC_STRPN
18 PsiBlast_PDB 76.6144% -72 - C7 -3RAD 4.3 PARC_STRPN
31 PsiBlast_CBE 76.5844% -73 - C7 -4KPF 4.2 PARC_STRPN
13 PsiBlast_PDB 76.4044% -68 - C7 -3K9F 4.0 PARC_STRPN
33 PsiBlast_CBE 76.3844% -72 - C7 -4KPE 3.8 PARC_STRPN
42 PsiBlast_CBE 76.3044% -68 - C7 -3K9F 3.6 PARC_STRPN
12 PsiBlast_PDB 68.4644% -69 - C7 -3FOF 3.3 PARC_STRPN
11 PsiBlast_PDB 67.9244% -65 - C7 -3FOE Error PARC_STRPN
45 PsiBlast_CBE 39.9931% -20 - C7 -4GFH Error TOP2_YEAST
46 PsiBlast_CBE 39.6131% -19 - C7 -4GFH Error TOP2_YEAST
47 PsiBlast_CBE 38.5131% -22 - C7 -2RGR 4.0 TOP2_YEAST