@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA0009: (2016-03-11 )
MLDIRLFRNEPDTVKSKIELRGDDPKVVDEILELDEQRRKLISATEEMKARRNKVSEEIALKKRNKENADDVIAEMRTLGDDIKEKDSQLNEIDNKMTGILCRIPNLISDDVPQGESDEDNVEVKKWGTPREFSFEPKAHWDIVEELKMADFDRAAKVSGARFVYLTNEGAQLERALMNYMITKHTTQHGYTEMMVPQLVNADTMYGTGQLPKFEEDLFKVEKEGLYTIPTAEVPLTNFYRNEIIQPGVLPEKFTGQSACFRSEAGSAGRDTRGLIRLHQFDKVEMVRFEQPEDSWNALEEMTTNAEAILEELGLPYRRVILCTGDIGFSASKTYDIEVWLPSYNDYKEISSCSNCTDFQARRANIRFKRDKAAKPELAHTLNGSGLAVGRTFAAIVENYQNEDGTVTIPEALVPFMGGKTQISKPVK

Atome Classification :

(34 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SSA_B_11(2DQ0)
SYS_PYRHO
[Raw transfer]




SSA_A_7(2DQ0)
SYS_PYRHO
[Raw transfer]




SRP_D_4(1WLE)
SYSM_BOVIN
[Raw transfer]




SRP_C_3(1WLE)
SYSM_BOVIN
[Raw transfer]




SRP_C_3(1WLE)
SYSM_BOVIN
[Raw transfer]




AHX_C_3(1SES)
SYS_THET2
[Raw transfer]




AHX_C_3(1SES)
SYS_THET2
[Raw transfer]




SSA_C_3(1SET)
SYS_THET2
[Raw transfer]




SSA_A_3(2DQ3)
SYS_AQUAE
[Raw transfer]




SSA_D_4(1SET)
SYS_THET2
[Raw transfer]




ATP_A_3(3LSS)
?
[Raw transfer]




ATP_A_3(3LSS)
?
[Raw transfer]




SSA_A_2(4L87)
SYSC_HUMAN
[Raw transfer]




ATP_A_2(3QO7)
SYSC_CANAL
[Raw transfer]




ATP_B_7(3LSS)
?
[Raw transfer]




ATP_B_7(3LSS)
?
[Raw transfer]




AMP_B_8(2ZR2)
SYS_PYRHO
[Raw transfer]




AMP_A_3(3ERR)
DYHC1_MOUSE
[Raw transfer]




AMP_A_3(3ERR)
DYHC1_MOUSE
[Raw transfer]




AMP_A_3(3ERR)
DYHC1_MOUSE
[Raw transfer]




AMP_D_4(1SES)
SYS_THET2
[Raw transfer]




AMP_B_4(3ERR)
SYS_THET2
[Raw transfer]




72 HHSearch 91.3052% -64 - C4 -2DQ3 6.5 SYS_AQUAE
1 PsiBlast_PDB 90.9951% -64 - C4 -2DQ3 - SYS_AQUAE -
22 PsiBlast_CBE 86.8941% -61 - C4 -2DQ0 6.5 SYS_PYRHO
21 PsiBlast_CBE 86.4541% -60 - C4 -2ZR2 5.7 SYS_PYRHO
74 HHSearch 86.1343% -56 - C4 -2DQ0 6.4 SYS_PYRHO
2 PsiBlast_PDB 86.0041% -58 - C4 -2DQ0 - SYS_PYRHO -
4 PsiBlast_PDB 85.9341% -58 - C4 -2ZR3 - SYS_PYRHO -
3 PsiBlast_PDB 85.9041% -59 - C4 -2ZR2 - SYS_PYRHO -
76 HHSearch 82.9835% -56 - C4 -3QNE - SYSC_CANAL -
13 PsiBlast_PDB 82.6033% -59 - C4 -4L87 7.1 SYSC_HUMAN
6 PsiBlast_PDB 82.4533% -58 - C4 -3QO7 4.7 SYSC_CANAL
8 PsiBlast_PDB 82.1733% -57 - C4 -3QO5 - SYSC_CANAL -
75 HHSearch 82.1535% -57 - C4 -3VBB - SYSC_HUMAN -
5 PsiBlast_PDB 82.0833% -58 - C4 -3QNE - SYSC_CANAL -
27 PsiBlast_CBE 81.4833% -63 - C4 -3VBB - SYSC_HUMAN -
7 PsiBlast_PDB 81.4633% -55 - C4 -3QO8 - SYSC_CANAL -
14 PsiBlast_PDB 81.4533% -62 - C4 -3VBB - SYSC_HUMAN -
15 PsiBlast_PDB 81.0733% -60 - C4 -3LSQ - ? -
12 PsiBlast_PDB 81.0535% -54 - C4 -1SET 6.5 SYS_THET2
73 HHSearch 81.0135% -51 - C4 -1SES 5.9 SYS_THET2
11 PsiBlast_PDB 80.8335% -55 - C4 -1SES 5.9 SYS_THET2
71 HHSearch 80.3435% -51 - C4 -3LSS 5.6 ?
16 PsiBlast_PDB 80.2233% -57 - C4 -3LSS 5.6 ?
23 PsiBlast_CBE 80.1735% -54 - C4 -1SET 6.7 SYS_THET2
30 PsiBlast_CBE 79.2933% -54 - C4 -3LSS 5.4 ?
62 Fugue 79.0635% -54 - C4 -3LSS 5.4 ?
24 PsiBlast_CBE 78.5235% -52 - C4 -1SES 5.7 SYS_THET2
18 PsiBlast_PDB 77.3132% -50 - C4 -1WLE 7.1 SYSM_BOVIN
61 Fugue 76.7930% -50 - C4 -1WLE 7.1 SYSM_BOVIN
32 PsiBlast_CBE 75.6532% -47 - C4 -1WLE 7.0 SYSM_BOVIN
63 Fugue 73.1232% -39 - C4 -3ERR 6.0 DYHC1_MOUSE (first)
31 PsiBlast_CBE 71.7636% -58 - C4 -3ERR 5.9 SYS_THET2
17 PsiBlast_PDB 71.2036% -55 - C4 -3ERR 6.0 DYHC1_MOUSE (first)
77 HHSearch 69.7436% -51 - C4 -3ERR 6.0 DYHC1_MOUSE (first)