@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA0018: (2016-03-11 )
MKWLKQLQSLHTKLVIVYVLLIIIGMQIIGLYFTNNLEKELLDNFKKNITQYAKQLEISIEKVYDEKGSVNAQKDIQNLLSEYANRQEIGEIRFIDKDQIIIATTKQSNRSLINQKANDSSVQKALSLGQSNDHLILKDYGGGKDRVWVYNIPVKVDKKVIGNIYIESKINDVYNQLNNINQIFIVGTAISLLITVILGFFIARTITKPITDMRNQTVEMSRGNYTQRVKIYGNDEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGIIATDRRGRIRIVNDMALKMLGMAKEDIIGYYMLSVLSLEDEFKLEEIQENNDSFLLDLNEEEGLIARVNFSTIVQETGFVTGYIAVLHDVTEQQQVERERREFVANVSHELRTPLTSMNSYIEALEEGAWKDEELAPQFLSVTREETERMIRLVNDLLQLSKMDNESDQINKEIIDFNMFINKIINRHEMSAKDTTFIRDIPKKTIFTEFDPDKMTQVFDNVITNAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRKMGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCEVIEDGDWDE

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_4(3SL2)

[Raw transfer]




ATP_A_4(3SL2)

[Raw transfer]




AN2_A_3(4U7O)
?
[Raw transfer]




AN2_B_4(4U7O)
?
[Raw transfer]




ANP_A_3(4BIW)
CPXA_ECOLI
[Raw transfer]




ATP_A_3(4CB0)
CPXA_ECOLI
[Raw transfer]




ADP_A_3(4JAS)
?
[Raw transfer]




ADP_A_8(4JAV)
?
[Raw transfer]




ANP_A_3(1ID0)

[Raw transfer]




ADP_A_7(3DGE)
?
[Raw transfer]




ADP_B_13(4JAV)
?
[Raw transfer]




ADP_A_2(2C2A)
?
[Raw transfer]




ADP_B_8(3DGE)
?
[Raw transfer]




ADP_A_2(4JAU)
?
[Raw transfer]




88 Fugue 82.9442% -65 - C4 -4I5S - ? -
1 PsiBlast_PDB 81.5844% -62 - C4 -4I5S - ? -
3 PsiBlast_PDB 78.4449% -66 - C5 -4U7O 9.1 ?
2 PsiBlast_PDB 72.6649% -76 - C5 -4U7N - ? -
21 PsiBlast_CBE 70.8249% -64 - C5 -4U7O 9.6 ?
72 HHSearch 67.1753% -79 * C5 *3SL2 7.9
9 PsiBlast_PDB 66.8536% -52 - C5 -4JAV 8.9 ?
23 PsiBlast_CBE 65.5736% -55 - C5 -4JAV 7.6 ?
6 PsiBlast_PDB 65.5153% -67 - C5 -3SL2 7.9
67 HHSearch 65.0737% -80 - C- -2C2A - ? -
8 PsiBlast_PDB 64.1536% -49 - C5 -3DGE 6.8 ?
10 PsiBlast_PDB 63.4336% -51 - C5 -4JAS 9.1 ?
7 PsiBlast_PDB 63.1836% -59 - C5 -2C2A 7.3 ?
11 PsiBlast_PDB 63.1436% -55 - C5 -4JAU 6.7 ?
24 PsiBlast_CBE 62.9536% -47 - C5 -3DGE 8.0 ?
65 HHSearch 59.1924% -70 - C4 -3A0R - ? -
4 PsiBlast_PDB 57.7896%-112 - C6 -4MN5 - WALK_STAAU -
16 PsiBlast_PDB 56.9227% -40 - C5 -4BIU - CPXA_ECOLI -
20 PsiBlast_PDB 56.4524% -58 - C4 -3A0R - ? -
22 PsiBlast_CBE 56.03100%-134 - C6 -4MN6 - WALK_STAAU -