@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA0089: (2016-03-12 )
MSQLLNDTLSAWLLIESLSPGEVNFTAEDILSAEHFKNGAKQAQLQSFDEYFEIWNSERFIISEEKSETGELIFKFYRHCFRYNEINLKIQDIFDDYSDIHNPNGTHCYGYTFNTDKHGKVIVDSIHIPMIMSALKEIEKNKNANIEEKFNDSVEKFFQKVKEILADEPINEFKLKKMDKAYDEYFSVLNSKKDGLFGHYVAIEYVKDSDLPQPEFNSFFISDIEKARKSPNQTLIDYIEGVEESQRIEVDENKEMFDKFLHPSRLPDGRWPSQTEFRLSLMQQLAVNQITSGNERISSVNGPPGTGKTTLLKDIFAHLVVERGKELAKLNNPKDAFVKTKIHETDDKYVYLLKESIAKYKMVVASSNNGAVENISKDLPKIEEIIRNPEKCKFPKYEQNYANLAHELKDFAEIAEDLIGESAWGLFSGVFGKSTNINQVLSHMLKQDANDIGFAKLLQNENNRMSYNELMSEWQSHQRAFLEELRHVEMLKEESIRAYDVYKNCESFSKIEQVINSEKTSIEEQVYHLDNETLRDNKEIEDLDNRINYIVKQIETLNELIKSIKESNKGFINKLKAMFNSEEDESYKDHNKEKQQLLTQQLELEKCKKNKHEDLVSKLKEKEKLIKQLTKVQLQLDELNSQLQELEAYRIESKITIPEKDFWSDNNYDERQVTNLWTSDELQYRRAMLFLRAMILHKLLLIANNTTIYYAINDFKDRRKLIDANPDKVHNAWNVMHLIFPVVSTTFASFKSMYGGIPKDFIDYLFIDEAGQAIPQAAVGALYRSKKVVAVGDPIQIEPVVTLESHLIDNIRKNYHVPEYLVSKEASVQSVADNANQYGFWKSDATDSNQKTWIGIPLWVHRRCLKPMFTIANQIAYNNKMVLPSNITKVGKTGWYDVKGNAVQKQFVKEHGEKVVGLLADDWIEAIKEGKNEPSSFVISPFSAVQQQIKRMLKQQLPTRIDIERTKINQWVDKSIGTVHTFQGKEAQKVYFVIGTDNTQDGAVNWSCEKPNLLNVAVTRAKKEFYVIGDMQRIQMKPFYETIFKERNVK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_A_6(2XZL)
NAM7_YEAST
[Raw transfer]




ADP_A_7(2GK6)
RENT1_HUMAN
[Raw transfer]




51 Fugue 72.5713% -3 - C2 -2WJY - RENT1_HUMAN -
50 Fugue 71.2014% -12 - C2 -4B3F - SMBP2_HUMAN -
49 Fugue 67.8614% -15 * C2 *2GK6 - RENT1_HUMAN -
54 Fugue 66.6218% 38 - C2 -4PJ3 - AQR_HUMAN -
1 PsiBlast_PDB 55.4022% -26 - C3 -4B3F - SMBP2_HUMAN -
29 HHSearch 54.5618% -49 - C3 -2WJY - RENT1_HUMAN -
30 HHSearch 52.7717% -48 * C3 *2XZL 5.6 NAM7_YEAST
28 HHSearch 52.2017% -61 - C3 -2GK6 4.6 RENT1_HUMAN
32 HHSearch 49.0916% -43 - C3 -3VKW - -
18 PsiBlast_PDB 49.0820% -9 - C3 -2XZL - NAM7_YEAST -
52 Fugue 47.189% 5 - C2 -1W36 - RECD_ECOLI -
53 Fugue 38.6915% 85 - C2 -4WHE - ? -
56 Fugue 38.5617% 136 - C2 -2FXO - MYH7_HUMAN -
45 HHSearch 36.4326% 113 - C3 -1W36 - RECD_ECOLI -
34 HHSearch 36.1230% 106 - C3 -3E1S - RECDL_DEIRA -
48 HHSearch 36.0724% 95 - C3 -1PJR - PCRA_GEOSE -
47 HHSearch 35.9418% 13 - C3 -1UAA - REP_ECOLI -
57 Fugue 35.8013% 182 - C2 -4LL7 - SHE3_YEAST -
37 HHSearch 35.5435% 226 - C3 -3UPU - DDA_BPT4 -
8 PsiBlast_PDB 35.4836% 172 - C3 -2GK7 - -