@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA0143: (2016-03-12 )
MLTIPEKENRGSKEQEVAIMIDALADKGKKALEALSKKSQEEIDHIVHQMSLAAVDQHMVLAKLAHEETGRGIYEDKAIKNLYASEYIWNSIKDNKTVGIIGEDKEKGLTYVAEPIGVICGVTPTTNPTSTTIFKAMIAIKTGNPIIFAFHPSAQESSKRAAEVVLEAAMKAGAPKDIIQWIEVPSIEATKQLMNHKGIALVLATGGSGMVKSAYSTGKPALGVGPGNVPSYIEKTAHIKRAVNDIIGSKTFDNGMICASEQVVVIDKEIYKDVTNEFKAHQAYFVKKDELQRLENAIMNEQKTGIKPDIVGKSAVEIAELAGIPVPENTKLIIAEISGVGSDYPLSREKLSPVLALVKAQSTKQAFQICEDTLHFGGLGHTAVIHTEDETLQKDFGLRMKACRVLVNTPSAVGGIGDMYNELIPSLTLGCGSYGRNSISHNVSATDLLNIKTIAKRRNNTQIFKVPAQIYFEENAIMSLTTMDKIEKVMIVCDPGMVEFGYTKTVENVLRQRTEQPQIKIFSEVEPNPSTNTVYKGLEMMVDFQPDTIIALGGGSAMDAAKAMWMFFEHPETSFFGAKQKFLDIGKRTYKIGMPENATFICIPTTSGTGSEVTPFAVITDSETNVKYPLADFALTPDVAIIDPQFVMSVPKSVTADTGMDVLTHAMESYVSVMASDYTRGLSLQAIKLTFEYLKSSVEKGDKVSREKMHNASTLAGMAFANAFLGIAHSIAHKIGGEYGIPHGRANAILLPHIIRYNAKDPQKHALFPKYEFFRADTDYADIAKFLGLKGNTTEALVESLAKAVYELGQSVGIEMNLKSQGVSEEELNESIDRMAELAFEDQCTTANPKEALISEIKDIIQTSYDYKQ

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_B_7(2BI4)
FUCO_ECOLI
[Raw transfer]



NAP_A_5(1O2D)
?
[Raw transfer]



NAD_A_4(2BI4)
FUCO_ECOLI
[Raw transfer]



NAD_B_7(2BL4)
FUCO_ECOLI
[Raw transfer]



NAD_A_4(2BL4)
FUCO_ECOLI
[Raw transfer]



NAP_A_7(1VHD)
?
[Raw transfer]



APR_A_7(1RRM)
FUCO_ECOLI
[Raw transfer]



APR_A_7(1RRM)
FUCO_ECOLI
[Raw transfer]



UNL_A_2(3RF7)
?
[Raw transfer]
21 PsiBlast_CBE 92.6748% -79 - C1 -3K9D - ? -
2 PsiBlast_PDB 92.2448% -78 - C1 -3K9D - ? -
71 Fugue 92.2145% -75 - C1 -3K9D - ? -
22 PsiBlast_CBE 90.8848% -75 - C1 -3K9D - ? -
1 PsiBlast_PDB 90.2548% -79 - C1 -3MY7 - ? -
65 HHSearch 87.5444% -72 - C1 -3K9D - ? -
57 HHSearch 81.4447% -60 - C1 -3MY7 - ? -
40 PsiBlast_CBE 80.5834% -79 - C2 -3BFJ - DHAT_KLEPN -
39 PsiBlast_CBE 80.5734% -79 - C2 -3BFJ - DHAT_KLEPN -
41 PsiBlast_CBE 80.5434% -78 - C2 -3BFJ - DHAT_KLEPN -
5 PsiBlast_PDB 80.1634% -79 - C2 -3BFJ - DHAT_KLEPN -
25 PsiBlast_CBE 80.1334% -77 - C2 -3BFJ - DHAT_KLEPN -
43 PsiBlast_CBE 79.6334% -76 - C2 -3BFJ - DHAT_KLEPN -
42 PsiBlast_CBE 79.5434% -77 - C2 -3BFJ - DHAT_KLEPN -
64 HHSearch 78.7935% -70 - C2 -1RRM 8.0 FUCO_ECOLI
23 PsiBlast_CBE 76.7234% -78 - C2 -2BL4 8.1 FUCO_ECOLI
3 PsiBlast_PDB 76.6734% -82 - C2 -2BI4 7.7 FUCO_ECOLI
24 PsiBlast_CBE 76.6634% -79 - C2 -2BI4 7.7 FUCO_ECOLI
8 PsiBlast_PDB 76.3234% -74 - C2 -1RRM 8.0 FUCO_ECOLI
4 PsiBlast_PDB 75.3934% -80 - C2 -2BL4 7.1 FUCO_ECOLI
10 PsiBlast_PDB 48.0434% -53 - C2 -1O2D 9.6 ?
11 PsiBlast_PDB 47.5934% -53 - C2 -1VHD 8.2 ?