@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA0148: (2016-03-12 )
MFDDKILLITGGTGSFGNAVMKRFLDSNIKEIRIFSRDEKKQDDIRKKYNNSKLKFYIGDVRDSQSVETAMRDVDYVFHAAALKQVPSCEFFPVEAVKTNIIGTENVLQSAIHQNVKKVICLSTDKAAYPINAMGISKAMMEKVFVAKSRNIRSEQTLICGTRYGNVMASRGSVIPLFIDKIKAGEPLTITDPDMTRFLMSLEDAVELVVHAFKHAETGDIMVQKAPSSTVGDLATALLELFEADNAIEIIGTRHGEKKAETLLTREEYAQCEDMGDYFRVPADSRDLNYSNYVETGNEKITQSYEYNSDNTHILTVEEIKEKLLTLEYVRNELNDYKASMR

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDP_A_3(2GN4)
PSEB_HELPY
[Raw transfer]



NDP_A_3(2GN4)
PSEB_HELPY
[Raw transfer]



NDP_A_3(2GN4)
PSEB_HELPY
[Raw transfer]



NDP_B_5(2GN4)
PSEB_HELPY
[Raw transfer]



NAP_B_16(2GNA)
PSEB_HELPY
[Raw transfer]



NAP_A_7(2GN6)
PSEB_HELPY
[Raw transfer]



NAP_A_2(3VVC)
?
[Raw transfer]



NAP_B_13(2GN6)
PSEB_HELPY
[Raw transfer]



NAP_A_13(2GNA)
PSEB_HELPY
[Raw transfer]



NAP_B_13(2GN8)
PSEB_HELPY
[Raw transfer]



NAP_A_7(2GN8)
PSEB_HELPY
[Raw transfer]



NAP_B_13(2GN9)
PSEB_HELPY
[Raw transfer]



NAP_A_2(4G5H)
?
[Raw transfer]



NAP_A_7(2GN9)
PSEB_HELPY
[Raw transfer]



NDP_A_2(4TQG)
?
[Raw transfer]



NDP_A_2(4TQG)
?
[Raw transfer]



UDZ_B_20(3W1V)
?
[Raw transfer]



GDU_A_7(2GNA)
PSEB_HELPY
[Raw transfer]



GDU_B_10(2GNA)
PSEB_HELPY
[Raw transfer]
1 PsiBlast_PDB 92.64100% -93 - C1 -3W1V - ? -
21 PsiBlast_CBE 92.35100% -93 - C1 -3W1V 7.1 ?
2 PsiBlast_PDB 92.29100% -96 - C1 -4G5H 11.7 ?
3 PsiBlast_PDB 89.3999% -97 - C1 -3VVC 10.7 ?
4 PsiBlast_PDB 82.8267% -95 - C1 -4J2O - ? -
7 PsiBlast_PDB 68.0640% -68 - C1 -2GN8 12.5 PSEB_HELPY
24 PsiBlast_CBE 68.0540% -71 - C1 -2GN8 11.9 PSEB_HELPY
37 Fugue 68.0440% -70 - C1 -2GN4 12.8 PSEB_HELPY
5 PsiBlast_PDB 67.8340% -72 - C1 -2GN4 12.8 PSEB_HELPY
22 PsiBlast_CBE 67.5940% -72 - C1 -2GNA 12.1 PSEB_HELPY
23 PsiBlast_CBE 67.5540% -73 - C1 -2GN9 11.4 PSEB_HELPY
9 PsiBlast_PDB 67.2740% -71 - C1 -2GNA 11.3 PSEB_HELPY
6 PsiBlast_PDB 67.1740% -70 - C1 -2GN6 11.3 PSEB_HELPY
26 PsiBlast_CBE 66.4840% -69 - C1 -2GN4 12.6 PSEB_HELPY
8 PsiBlast_PDB 66.4040% -70 - C1 -2GN9 11.9 PSEB_HELPY
25 PsiBlast_CBE 66.2040% -65 - C1 -2GN6 12.4 PSEB_HELPY
38 Fugue 63.8835% -76 - C1 -4TQG 11.5 ?
48 HHSearch 63.6238% -61 - C1 -2GN4 12.8 PSEB_HELPY
10 PsiBlast_PDB 63.2237% -93 - C1 -4TQG 11.5 ?
47 HHSearch 59.5425% -84 - C1 -3PVZ - ? -