@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA0225: (2016-03-13 )
MTFEKETVLKTLFPEDVLSIAKGLTDGEVEFLQQVDSLLESNYRENINQHWIDATVPEDYFKDLGELNYFNNPLLYKDRPNAKMPSQLFQFFMSYLLARFDISLATLLGVHQGLGHNTFYFGGSKEQIAKYVPKLLSHELRTCFALTEPEHGSDVAGGLETVAERQGDTWVINGEKKWIGGAHVSDVIPVFAVNKKTGKPHCFVVRPEQDGVDIEVIDNKIALRIVPNALIKLTNVKVDEADRLQNITSFKDIAKILYSTRAGVAYMATGGMAGALRATLDYVTERKQFGKPISKYQLIQEKLAMMQGNLAQAMATCAQLANMQAHGEYDEVATSTAKMMNALRLRETVAMGRGITGGNGILADDYDIARFFSDAEAIYTYEGTHEINALVIGRALTGDSAFV

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

UCC_B_6(4Y9J)
?
[Raw transfer]




FAD_E_5(1SIQ)
GCDH_HUMAN
[Raw transfer]




FAD_A_2(2R0N)
GCDH_HUMAN
[Raw transfer]




FAD_E_5(1SIQ)
GCDH_HUMAN
[Raw transfer]




FAD_A_2(2R0M)
GCDH_HUMAN
[Raw transfer]




FDA_A_2(3SF6)
?
[Raw transfer]




FAD_E_5(1SIR)
GCDH_HUMAN
[Raw transfer]




FDA_A_2(3SF6)
?
[Raw transfer]




FAD_C_3(2DVL)
?
[Raw transfer]




FAD_D_4(2DVL)
?
[Raw transfer]




92 HHSearch 98.5136% -86 - C2 -2IX5 - ACOX4_ARATH -
21 PsiBlast_CBE 96.9136% -83 - C2 -2IX5 - ACOX4_ARATH -
1 PsiBlast_PDB 96.6436% -81 - C2 -2IX5 - ACOX4_ARATH -
23 PsiBlast_CBE 96.5136% -83 - C2 -2IX5 - ACOX4_ARATH -
26 PsiBlast_CBE 96.3536% -81 - C2 -2IX6 - ACOX4_ARATH -
22 PsiBlast_CBE 96.1436% -82 - C2 -2IX5 - ACOX4_ARATH -
28 PsiBlast_CBE 95.9936% -81 - C2 -2IX6 - ACOX4_ARATH -
2 PsiBlast_PDB 95.9536% -80 - C2 -2IX6 - ACOX4_ARATH -
27 PsiBlast_CBE 95.9236% -80 - C2 -2IX6 - ACOX4_ARATH -
24 PsiBlast_CBE 95.8236% -81 - C2 -2IX6 - ACOX4_ARATH -
25 PsiBlast_CBE 95.6536% -80 - C2 -2IX6 - ACOX4_ARATH -
96 HHSearch 94.5831% -87 - C2 -3SF6 10.2 ?
4 PsiBlast_PDB 94.4430% -82 - C2 -3SF6 10.0 ?
30 PsiBlast_CBE 94.3331% -88 - C2 -2EBA - ? -
3 PsiBlast_PDB 94.2331% -90 - C2 -2EBA - ? -
31 PsiBlast_CBE 94.2231% -87 - C2 -2EBA - ? -
35 PsiBlast_CBE 94.0431% -88 - C2 -2EBA - ? -
32 PsiBlast_CBE 93.7331% -88 - C2 -2EBA - ? -
34 PsiBlast_CBE 93.5731% -87 - C2 -2EBA - ? -
29 PsiBlast_CBE 93.5231% -88 - C2 -2EBA - ? -
95 HHSearch 91.8930% -89 - C2 -1SIQ 8.5 GCDH_HUMAN
10 PsiBlast_PDB 81.9033% -79 - C2 -1SIQ 8.5 GCDH_HUMAN
12 PsiBlast_PDB 81.6633% -81 - C2 -2R0N 9.6 GCDH_HUMAN
11 PsiBlast_PDB 81.1833% -79 - C2 -1SIR 9.7 GCDH_HUMAN
13 PsiBlast_PDB 78.5832% -82 - C2 -2R0M 9.2 GCDH_HUMAN
50 PsiBlast_CBE 74.8932% -67 - C2 -2DVL 9.5 ?
51 PsiBlast_CBE 74.2732% -68 - C2 -2DVL 8.6 ?