@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA0232: (2016-03-13 )
MNKFKGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVDILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEHGDTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAKGATYYGVAMGLARITEAIFRNEDAVLTVSALLEGEYDEEDVYIGVPAVINRNGIRNVVEIPLNDEEQSKFAHSAKTLKDIMAEAEELK

Atome Classification :

(37 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_A_3(3D4P)
LDH1_STAAC
[Raw transfer]



NAD_B_5(3D4P)
LDH1_STAAC
[Raw transfer]



NAD_H_8(1EZ4)
LDH_LACPE
[Raw transfer]



NAD_A_3(3H3J)
LDH1_STAAC
[Raw transfer]



NAD_B_6(3H3J)
LDH1_STAAC
[Raw transfer]



NAD_E_5(1EZ4)
LDH_LACPE
[Raw transfer]



NAD_F_6(1EZ4)
LDH_LACPE
[Raw transfer]



NAD_G_7(1EZ4)
LDH_LACPE
[Raw transfer]



NAD_E_5(1EZ4)
LDH_LACPE
[Raw transfer]



ENA_A_2(2X0J)
MDH_ARCFU
[Raw transfer]



NAD_O_15(2LDB)
LDH_GEOSE
[Raw transfer]



NAD_R_18(2LDB)
LDH_GEOSE
[Raw transfer]



NAD_Q_17(2LDB)
LDH_GEOSE
[Raw transfer]



NAD_P_16(2LDB)
LDH_GEOSE
[Raw transfer]



NAD_D_6(3PQF)
LDH_BACSU
[Raw transfer]



NAD_C_11(3WSW)
?
[Raw transfer]



NAD_C_5(3PQF)
LDH_BACSU
[Raw transfer]



NAD_B_8(3WSW)
?
[Raw transfer]



NAD_D_13(3WSW)
?
[Raw transfer]



NAD_A_5(3WSW)
?
[Raw transfer]



NAD_A_5(3WSW)
?
[Raw transfer]



NAD_A_5(1LLD)
LDH2_BIFL2
[Raw transfer]



MPD_A_6(4M1Q)
?
[Raw transfer]
3 PsiBlast_PDB 97.8199%-131 - C5 -3H3J 10.1 LDH1_STAAC
22 PsiBlast_CBE 97.6199%-131 - C5 -3H3J 10.6 LDH1_STAAC
1 PsiBlast_PDB 96.9299%-132 - C5 -3D0O - LDH1_STAAC -
2 PsiBlast_PDB 96.4999%-137 - C5 -3D4P 9.6 LDH1_STAAC
21 PsiBlast_CBE 96.3999%-135 - C5 -3D4P 10.6 LDH1_STAAC
124 HHSearch 96.3099%-131 - C5 -3D0O - LDH1_STAAC -
9 PsiBlast_PDB 85.4765%-131 - C5 -3PQF - LDH_BACSU -
36 PsiBlast_CBE 84.9265%-130 - C5 -3PQD - LDH_BACSU -
37 PsiBlast_CBE 84.6365%-128 - C5 -3PQD - LDH_BACSU -
8 PsiBlast_PDB 84.5165%-131 - C5 -3PQE - LDH_BACSU -
28 PsiBlast_CBE 84.2964%-127 - C5 -1LDN - LDH_GEOSE -
7 PsiBlast_PDB 83.9665%-129 - C5 -3PQD - LDH_BACSU -
40 PsiBlast_CBE 83.8865%-128 - C5 -3PQD - LDH_BACSU -
24 PsiBlast_CBE 83.8064%-124 - C5 -1LDN - LDH_GEOSE -
12 PsiBlast_PDB 83.6858%-133 - C5 -4LN1 - LDH1_BACCR -
10 PsiBlast_PDB 83.5561%-127 - C5 -4M1Q 3.4 ?
25 PsiBlast_CBE 83.2164%-123 - C5 -1LDN - LDH_GEOSE -
26 PsiBlast_CBE 83.1664%-123 - C5 -1LDN - LDH_GEOSE -
112 HHSearch 82.9663%-127 - C5 -3PQE - LDH_BACSU -
41 PsiBlast_CBE 82.9065%-132 - C5 -3PQF 8.3 LDH_BACSU
42 PsiBlast_CBE 82.5865%-133 - C5 -3PQF 7.9 LDH_BACSU
66 PsiBlast_CBE 78.6153%-129 - C5 -1EZ4 8.9 LDH_LACPE
68 PsiBlast_CBE 78.4453%-130 - C5 -1EZ4 9.2 LDH_LACPE
30 PsiBlast_CBE 77.8364%-129 - C5 -2LDB 7.0 LDH_GEOSE
6 PsiBlast_PDB 77.8164%-129 - C5 -2LDB 6.9 LDH_GEOSE
32 PsiBlast_CBE 77.4864%-129 - C5 -2LDB 7.0 LDH_GEOSE
31 PsiBlast_CBE 77.3864%-129 - C5 -2LDB 6.8 LDH_GEOSE
67 PsiBlast_CBE 77.2553%-132 - C5 -1EZ4 9.0 LDH_LACPE
19 PsiBlast_PDB 77.2453%-134 - C5 -1EZ4 9.1 LDH_LACPE
123 HHSearch 76.7351%-128 - C5 -1EZ4 9.0 LDH_LACPE
70 PsiBlast_CBE 75.9046%-129 - C5 -3WSW 7.8 ?
69 PsiBlast_CBE 75.5646%-126 - C5 -3WSW 7.0 ?
72 PsiBlast_CBE 75.4746%-125 - C5 -3WSW 8.0 ?
126 HHSearch 74.9445%-120 - C5 -3WSW 8.0 ?
71 PsiBlast_CBE 74.9346%-126 - C5 -3WSW 8.0 ?
119 HHSearch 71.6938%-119 - C5 -1LLD 7.8 LDH2_BIFL2
115 HHSearch 62.9737%-103 - C5 -2X0J 10.8 MDH_ARCFU