@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA0240: (2016-03-13 )
MKALKLYGVEDLRYEDNEKPVIESANDVIVKVRATGICGSDTSRYKKMGPYIKGMPFGHEFSGVVDAIGSDVTHVNVGDKVTGCPAIPCYQCEYCLKGEYARCEKLFVIGSYEPGSFAEYVKLPAQNVLKVPDNVDYIEAAMVEPSAVVAHGFYKSNIQPGMTVAVMGCGSIGLLAIQWARIFGAAHIIAIDIDAHKLDIATSLGAHQTINSKEENLEKFIENHYANQIDLAIESSGAKVTIGQILTLPKKGGEVVLLGIPYDDIEIDRVHFEKILRNELTVCGSWNCLSSNFPGKEWTATLHYMKTKDINVKPIISHFLPLEKGPETFDKLVNKKERFDKVMFTIY

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

MES_A_7(2DQ4)
TDH_THET8
[Raw transfer]



MES_A_7(2DQ4)
TDH_THET8
[Raw transfer]



MES_B_8(2DQ4)
TDH_THET8
[Raw transfer]



GOL_B_9(4UEJ)
?
[Raw transfer]



TRS_B_9(4UEK)
?
[Raw transfer]
13 PsiBlast_PDB 89.9531%-101 - C1 -4CPD - ? -
28 PsiBlast_CBE 88.4031%-100 - C1 -4CPD - ? -
27 PsiBlast_CBE 86.4031%-104 - C1 -4CPD - ? -
5 PsiBlast_PDB 85.5930% -99 - C1 -1PL7 - DHSO_HUMAN -
6 PsiBlast_PDB 85.4030% -97 - C1 -1PL8 - DHSO_HUMAN -
9 PsiBlast_PDB 84.7530% -95 - C1 -3QE3 - DHSO_SHEEP -
34 PsiBlast_CBE 83.3131%-104 - C1 -3PII - ADH3_GEOSE -
58 HHSearch 82.5028% -98 - C1 -1E3J - ? -
4 PsiBlast_PDB 82.4936% -96 - C1 -4UEO - ? -
22 PsiBlast_CBE 81.7536% -98 - C1 -4UEK 3.6 ?
14 PsiBlast_PDB 81.5731% -99 - C1 -1RJW - ADH3_GEOSE -
21 PsiBlast_CBE 81.4036% -96 - C1 -4UEO - ? -
32 PsiBlast_CBE 81.3331%-101 - C1 -3PII - ADH3_GEOSE -
10 PsiBlast_PDB 80.9430%-103 - C1 -1PL6 - DHSO_HUMAN -
16 PsiBlast_PDB 80.6628%-101 - C1 -1E3J - ? -
29 PsiBlast_CBE 80.4631%-100 - C1 -1RJW - ADH3_GEOSE -
1 PsiBlast_PDB 80.4036% -99 - C1 -4A2C - GATD_ECOLI -
23 PsiBlast_CBE 80.3836% -95 - C1 -4UEJ 3.4 ?
24 PsiBlast_CBE 80.3536% -98 - C1 -4A2C - GATD_ECOLI -
3 PsiBlast_PDB 79.9536% -95 - C1 -4UEK - ? -
52 HHSearch 75.4230% -84 * C1 *2DQ4 2.0 TDH_THET8
11 PsiBlast_PDB 72.4531% -82 - C1 -2DQ4 2.0 TDH_THET8
26 PsiBlast_CBE 71.2431% -79 - C1 -2DQ4 2.2 TDH_THET8