@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA0241: (2016-03-13 )
MIYAGILAGGIGSRMGNVPLPKQFLDIDNKPILIHTIEKFILVSEFNEIIIATPAQWISHTQDILKKYNITDQRVKVVAGGTDRNETIMNIIDHIRNVNGINNDDVIVTHDAVRPFLTQRIIKENIEVAAKYGAVDTVIEAIDTIVMSKDKQNIHSIPVRNEMYQGQTPQSFNIKLLQDSYRALSSEQKEILSDACKIIVESGHAVKLVRGELYNIKVTTPYDLKVANAIIQGDIADD

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CTP_A_4(1I52)
ISPD_ECOLI
[Raw transfer]




CTP_A_5(4ZDQ)
ISPD_BURTA
[Raw transfer]




CDM_A_3(1INI)
ISPD_ECOLI
[Raw transfer]




CDF_A_3(2VSI)
?
[Raw transfer]




CDF_B_4(2VSI)
?
[Raw transfer]




C5P_A_3(2XWM)
?
[Raw transfer]




PGO_A_3(3N9W)
ISPD_ECOLI
[Raw transfer]




ACY_A_7(1VPA)
ISPD_THEMA
[Raw transfer]




1 PsiBlast_PDB 93.5662%-111 - C1 -4JIS - TARI_BACPZ -
2 PsiBlast_PDB 88.2951%-115 - C1 -2VSH - ? -
21 PsiBlast_CBE 88.0751%-114 - C1 -2VSI 3.8 ?
22 PsiBlast_CBE 86.9051%-111 - C1 -2VSH - ? -
3 PsiBlast_PDB 86.3651%-111 - C1 -2VSI 3.4 ?
112 HHSearch 86.1551%-114 - C1 -2VSH - ? -
103 Fugue 75.4027% -81 * C1 *1INI - ISPD_ECOLI -
102 Fugue 74.2127% -85 - C1 -1I52 - ISPD_ECOLI -
15 PsiBlast_PDB 70.9826% -95 - C1 -1I52 7.0 ISPD_ECOLI
104 Fugue 70.9124% -94 - C1 -4CVH - ISPD_HUMAN -
4 PsiBlast_PDB 70.8730%-100 - C1 -4YS8 - ISPD_BURTA -
17 PsiBlast_PDB 70.3726% -91 - C1 -1INI 6.9 ISPD_ECOLI
5 PsiBlast_PDB 70.2830% -93 - C1 -4ZDQ 7.7 ISPD_BURTA
6 PsiBlast_PDB 70.2326% -92 - C1 -4CVH - ISPD_HUMAN -
117 HHSearch 69.7326% -81 - C1 -1I52 - ISPD_ECOLI -
114 HHSearch 67.8925% -89 - C1 -3Q80 - ISPD_MYCTU -
16 PsiBlast_PDB 67.8126% -96 - C1 -1INJ - ISPD_ECOLI -
8 PsiBlast_PDB 67.0726% -86 - C1 -1W77 - ISPD_ARATH -
9 PsiBlast_PDB 67.0226% -91 - C1 -2YC3 - ISPD_ARATH -
11 PsiBlast_PDB 66.7926%-101 - C1 -1VGT - ISPD_ECOLI -