@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA0245: (2016-03-13 )
MKYAGILAGGIGSRMGNVPLPKQFLDLDNKPILIHTLEKFILINDFEKIIIATPQQWMTHTKDTLRKFKISDERIEVIQGGSDRNDTIMNIVKHIESTNGINDDDVIVTHDAVRPFLTHRIIKENIQAALEYGAVDTVIDAIDTIVTSKDNQTIDAIPVRNEMYQGQTPQSFNINLLKESYAQLSDEQKSILSDACKIIVETNKPVRLVKGELYNIKVTTPYDLKVANAIIRGGIADD

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CTP_A_4(1I52)
ISPD_ECOLI
[Raw transfer]




CTP_A_4(2XWL)
?
[Raw transfer]




CDM_A_3(1INI)
ISPD_ECOLI
[Raw transfer]




CDF_A_3(2VSI)
?
[Raw transfer]




C5P_A_3(2XWM)
?
[Raw transfer]




CDF_B_4(2VSI)
?
[Raw transfer]




C5P_A_7(1W77)
ISPD_ARATH
[Raw transfer]




PGO_A_3(3N9W)
ISPD_ECOLI
[Raw transfer]




ACY_A_7(1VPA)
ISPD_THEMA
[Raw transfer]




1 PsiBlast_PDB 92.7762% -97 - C1 -4JIS - TARI_BACPZ -
131 HHSearch 87.4851% -92 - C1 -2VSH - ? -
21 PsiBlast_CBE 87.3050% -95 - C1 -2VSI 3.8 ?
2 PsiBlast_PDB 87.0850% -94 - C1 -2VSH - ? -
22 PsiBlast_CBE 86.1450% -91 - C1 -2VSH - ? -
3 PsiBlast_PDB 85.9650% -90 - C1 -2VSI 3.4 ?
135 HHSearch 73.9028% -79 - C1 -2XWL - ? -
121 Fugue 73.3926% -86 - C1 -4CVH - ISPD_HUMAN -
134 HHSearch 70.7327% -85 - C1 -3Q80 - ISPD_MYCTU -
129 HHSearch 69.1725% -72 - C1 -1VPA - ISPD_THEMA -
120 Fugue 67.5525% -76 - C1 -1INI - ISPD_ECOLI -
6 PsiBlast_PDB 67.5526% -77 - C1 -1VPA 2.2 ISPD_THEMA
138 HHSearch 66.0727% -79 - C1 -2PX7 - ISPD_THET8 -
119 Fugue 64.8925% -73 * C1 *1I52 - ISPD_ECOLI -
7 PsiBlast_PDB 63.9127% -81 - C1 -2XWL 6.9 ?
8 PsiBlast_PDB 62.1027% -79 - C1 -2XWM 5.0 ?
10 PsiBlast_PDB 61.0824% -78 - C1 -2YC3 - ISPD_ARATH -
130 HHSearch 59.5924% -71 - C1 -2YC3 - ISPD_ARATH -
132 HHSearch 59.3825% -61 - C1 -1I52 - ISPD_ECOLI -
9 PsiBlast_PDB 59.2427% -71 - C1 -3Q7U - ISPD_MYCTU -