@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA0422: (2016-03-15 )
MKRLIGLVIVALVLLAACGSNNDKKVTIGVASNDTKAWEKVKELAKKDDIDVEIKHFSDYNLPNKALNDGDIDMNAFQHFAFLDQYKKAHKGTKISALSTTVLAPLGIYSDKIKDVKKVKDGAKVVIPNDVSNQARALKLLEAAGLIKLKKDFGLAGTVKDITSNPKHLKITAVDAQQTARALSDVDIAVINNGVATKAGKDPKNDPIFLEKSNSDAVKPYINIVAVNDKDLDNKTYAKIVELYHSKEAQKALQEDVKDGEKPVNLSKDEIKAIETSLAK

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GLY_B_2(1P99)
?
[Raw transfer]



MET_C_3(1P99)
?
[Raw transfer]



MET_C_3(1P99)
?
[Raw transfer]



MET_C_3(1P99)
?
[Raw transfer]



MET_B_15(4IB2)
?
[Raw transfer]



MET_B_4(3K2D)
?
[Raw transfer]



MET_A_2(4QHQ)
?
[Raw transfer]



MET_A_7(4IB2)
?
[Raw transfer]



MET_A_3(3K2D)
?
[Raw transfer]



MET_X_2(4YAH)
METQ_ECOLI
[Raw transfer]



MET_A_3(3TQW)
?
[Raw transfer]



MET_A_3(3TQW)
?
[Raw transfer]
60 Fugue 96.65100% -74 - C2 -1P99 3.4 ?
40 HHSearch 96.4599% -74 - C2 -1P99 3.4 ?
1 PsiBlast_PDB 96.4499% -74 - C2 -1P99 3.4 ?
2 PsiBlast_PDB 77.6643% -61 - C2 -4QHQ 3.4 ?
6 PsiBlast_PDB 74.7137% -65 - C2 -3K2D 3.0 ?
42 HHSearch 74.6333% -63 - C2 -1XS5 - TPN32_TREPA -
4 PsiBlast_PDB 73.7641% -51 - C2 -4YAH 3.9 METQ_ECOLI
9 PsiBlast_PDB 73.2433% -58 - C2 -1XS5 - TPN32_TREPA -
43 HHSearch 72.9241% -62 - C2 -3TQW 3.6 ?
21 PsiBlast_CBE 72.1837% -65 - C2 -3K2D 3.1 ?
3 PsiBlast_PDB 72.1140% -59 - C2 -3TQW 3.6 ?
10 PsiBlast_PDB 69.5737% -63 - C2 -3IR1 - ? -
29 PsiBlast_CBE 69.0737% -62 - C2 -3GXA - ? -
27 PsiBlast_CBE 69.0037% -58 - C2 -3IR1 - ? -
32 PsiBlast_CBE 68.9437% -62 - C2 -3GXA - ? -
46 HHSearch 68.5933% -49 - C2 -3IR1 - ? -
25 PsiBlast_CBE 68.3737% -63 - C2 -3IR1 - ? -
28 PsiBlast_CBE 68.3437% -64 - C2 -3GXA - ? -
23 PsiBlast_CBE 68.2237% -58 - C2 -3IR1 - ? -
30 PsiBlast_CBE 68.0737% -59 - C2 -3GXA - ? -
8 PsiBlast_PDB 66.8637% -58 - C2 -4IB2 3.8 ?
22 PsiBlast_CBE 66.3737% -60 - C2 -4IB2 3.7 ?