@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA0453: (2016-03-15 )
MIYETAPAKINFTLDTLFKRNDGYHEIEMIMTTVDLNDRLTFHKRKDRKIVVEIEHNYVPSNHKNLAYRAAQLFIEQYQLKQGVTISIDKEIPVSAGLAGGSADAAATLRGLNRLFDIGASLEELALLGSKIGTDIPFCIYNKTALCTGRGEKIEFLNKPPSAWVILAKPNLGISSPDIFKLINLDKRYDVHTKMCYEALENRDYQQLCQSLSNRLEPISVSKHPQIDKLKNNMLKSGADGALMSGSGPTVYGLARKESQAKNIYNAVNGCCNEVYLVRLLG

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_3(4DXL)
?
[Raw transfer]




ATP_A_2(4ED4)
?
[Raw transfer]




ADP_A_4(2V8P)
ISPE_AQUAE
[Raw transfer]




ANP_A_2(3PYF)
ISPE_MYCTU
[Raw transfer]




ANP_A_2(3PYF)
ISPE_MYCTU
[Raw transfer]




CDM_A_3(2V2Z)
ISPE_AQUAE
[Raw transfer]




GOL_A_2(3PYD)
ISPE_MYCTU
[Raw transfer]




ADP_A_2(3PYG)
ISPE_MYCTU
[Raw transfer]




CDM_A_2(3PYE)
ISPE_MYCTU
[Raw transfer]




GVS_A_3(2VF3)
ISPE_AQUAE
[Raw transfer]




C5P_A_2(4EMD)
?
[Raw transfer]




3 PsiBlast_PDB 93.1134% -73 - C1 -4EMD 5.8 ?
1 PsiBlast_PDB 92.5534% -71 - C1 -4DXL 6.2 ?
2 PsiBlast_PDB 91.4534% -74 - C1 -4ED4 6.3 ?
5 PsiBlast_PDB 90.9032% -73 - C1 -3PYE 4.2 ISPE_MYCTU
4 PsiBlast_PDB 89.5732% -74 - C1 -3PYD 1.9 ISPE_MYCTU
21 HHSearch 89.2930% -71 - C1 -3PYF 4.5 ISPE_MYCTU
6 PsiBlast_PDB 89.0432% -71 - C1 -3PYF 4.5 ISPE_MYCTU
7 PsiBlast_PDB 88.4232% -73 - C1 -3PYG 3.9 ISPE_MYCTU
22 HHSearch 87.8531% -89 - C1 -1UEK - ISPE_THET8 -
44 Fugue 84.3730% -71 - C1 -1UEK - ISPE_THET8 -
8 PsiBlast_PDB 77.6134% -78 - C1 -1UEK - ISPE_THET8 -
9 PsiBlast_PDB 76.7330% -72 - C1 -2WW4 - ISPE_ECOLI -
24 HHSearch 75.1829% -69 - C1 -2WW4 - ISPE_ECOLI -
10 PsiBlast_PDB 75.1630% -79 - C1 -1OJ4 - ISPE_ECOL6 -
47 Fugue 74.1919% -87 * C1 *1H74 - KHSE_METJA -
48 Fugue 72.8519% -78 - C1 -1FWK - KHSE_METJA -
16 PsiBlast_PDB 71.7829% -68 - C1 -2VF3 4.7 ISPE_AQUAE
46 Fugue 70.5321% -80 - C1 -1H72 - KHSE_METJA -
12 PsiBlast_PDB 70.4429% -66 - C1 -2V2V - ISPE_AQUAE -
29 HHSearch 70.3819% -79 - C1 -1H72 - KHSE_METJA -