@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA0477: (2016-03-15 )
MSKIIGSDRVKRGMAEMQKGGVIMDVVNAEQARIAEEAGAVAVMALERVPSDIRAAGGVARMANPKIVEEVMNAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADEEYHLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRHMRQVNSEVSRLTVMNDDEIMTFAKDIGAPYEILKQIKDNGRLPVVNFAAGGVATPQDAALMMELGADGVFVGSGIFKSEDPEKFAKAIVQATTHYQDYELIGRLASELGTAMKGLDINQLSLEERMQERGW

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

R5P_A_8(4ADU)
PDX1_PLABE
[Raw transfer]



GOL_A_4(4JDY)
PDXS_MYCTU
[Raw transfer]



GOL_C_6(4JDY)
PDXS_MYCTU
[Raw transfer]



R5P_B_9(4ADU)
PDX1_PLABE
[Raw transfer]



MPD_B_8(2ZBT)
PDXS_THET8
[Raw transfer]



MPD_C_5(2ZBT)
PDXS_THET8
[Raw transfer]



GOL_B_5(4JDY)
PDXS_MYCTU
[Raw transfer]



MPD_D_6(2ZBT)
PDXS_THET8
[Raw transfer]



MPD_A_7(2ZBT)
PDXS_THET8
[Raw transfer]



MPD_A_7(2ZBT)
PDXS_THET8
[Raw transfer]
5 PsiBlast_PDB 93.4177% -96 - C4 -4WXY - PDXS_GEOKA -
2 PsiBlast_PDB 92.5680%-107 - C4 -2NV2 - PDXS_BACSU -
26 PsiBlast_CBE 92.4880%-102 - C4 -2NV2 - PDXS_BACSU -
36 PsiBlast_CBE 92.2680%-103 - C4 -2NV2 - PDXS_BACSU -
31 PsiBlast_CBE 92.1080%-102 - C4 -2NV2 - PDXS_BACSU -
1 PsiBlast_PDB 91.9280%-109 - C4 -2NV1 - PDXS_BACSU -
46 PsiBlast_CBE 91.1577%-115 - C4 -4WY0 - PDXS_GEOKA -
52 PsiBlast_CBE 91.1277%-114 - C4 -4WY0 - PDXS_GEOKA -
23 PsiBlast_CBE 91.0880%-113 - C4 -2NV1 - PDXS_BACSU -
25 PsiBlast_CBE 90.8480%-111 - C4 -2NV1 - PDXS_BACSU -
48 PsiBlast_CBE 90.8277%-116 - C4 -4WY0 - PDXS_GEOKA -
24 PsiBlast_CBE 90.7880%-114 - C4 -2NV1 - PDXS_BACSU -
45 PsiBlast_CBE 90.4477%-118 - C4 -4WY0 - PDXS_GEOKA -
22 PsiBlast_CBE 90.0980%-107 - C4 -2NV1 - PDXS_BACSU -
44 PsiBlast_CBE 90.0677%-113 - C4 -4WY0 - PDXS_GEOKA -
138 HHSearch 89.8478%-105 - C4 -2NV1 - PDXS_BACSU -
49 PsiBlast_CBE 89.7677%-108 - C4 -4WY0 - PDXS_GEOKA -
47 PsiBlast_CBE 89.7277%-115 - C4 -4WY0 - PDXS_GEOKA -
139 HHSearch 89.6667% -98 * C4 *2YZR - PDXS_METJA -
6 PsiBlast_PDB 89.6277%-124 - C4 -4WXZ - PDXS_GEOKA -
53 PsiBlast_CBE 89.3766%-101 - C4 -2ZBT 2.8 PDXS_THET8
7 PsiBlast_PDB 89.2166%-103 - C4 -2ZBT 2.8 PDXS_THET8
54 PsiBlast_CBE 88.9166%-104 - C4 -2ZBT 2.6 PDXS_THET8
55 PsiBlast_CBE 88.8766%-102 - C4 -2ZBT 2.7 PDXS_THET8
13 PsiBlast_PDB 87.6763%-105 - C4 -4JDY 2.7 PDXS_MYCTU
65 PsiBlast_CBE 87.2363%-105 - C4 -4JDY 2.8 PDXS_MYCTU
66 PsiBlast_CBE 86.7363%-107 - C4 -4JDY 2.8 PDXS_MYCTU
140 HHSearch 86.3366% -97 - C4 -2ZBT 2.8 PDXS_THET8
18 PsiBlast_PDB 84.1955%-106 - C4 -4ADU 3.5 PDX1_PLABE
71 PsiBlast_CBE 83.8655%-104 - C4 -4ADU 4.3 PDX1_PLABE