@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA0500: (2016-03-16 )
MAGQVVQYGRHRKRRNYARISEVLELPNLIEIQTKSYEWFLREGLIEMFRDISPIEDFTGNLSLEFVDYRLGEPKYDLEESKNRDATYAAPLRVKVRLIIKETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKIDKNGRENYDATIIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGFSSDQEIVDLLGDNEYLRNTLEKDGTENTEQALLEIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGRYKTNKKLHLKHRLFNQKLAEPIVNTETGEIVVEEGTVLDRRKIDEIMDVLESNANSEVFELHGSVIDEPVEIQSIKVYVPNDDEGRTTTVIGNAFPDSEVKCITPADIIASMSYFFNLLSGIGYTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQDTESITPQQLINIRPVIASIKEFFGSSQLSQFMDQANPLAELTHKRRLSALGPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYARVNEFGFIETPYRKVDLDTHAITDQIDYLTADEEDSYVVAQANSKLDENGRFMDDEVVCRFRGNNTVMAKEKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEAPFVGTGMEHVAARDSGAAITAKHRGRVEHVESNEILVRRLVEENGVEHEGELDRYPLAKFKRSNSGTCYNQRPIVAVGDVVEYNEILADGPSMELGEMALGRNVVVGFMTWDGYNYEDAVIMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSESALKNLDDRGIVYIGAEVKDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNREEGDDTLSPGVNQLVRVYIVQKRKIHVGDKMCGRHGNKGVISKIVPEEDMPYLPDGRPIDIMLNPLGVPSRMNIGQVLELHLGMAAKNLGIHVASPVFDGANDDDVWSTIEEAGMARDGKTVLYDGRTGEPFDNRISVGVMYMLKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDTVGRVKTYEAIVKGENISRPSVPESFRVLMKELQSLGLDVKVMDEQDNEIEMTDVDDDDVVERKVDLQQNDAPETQKEVTD

Atome Classification :

(41 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_I_9(4YLN)
RPOB_ECOLI
[Raw transfer]
-
NACID_I_9(4YLO)
RPOB_ECOLI
[Raw transfer]
-
NACID_R_18(4YLN)
RPOB_ECOLI
[Raw transfer]
-
NACID_I_9(4YLP)
RPOB_ECOLI
[Raw transfer]
-
NACID_H_8(4OIO)
RPOB_THET8
[Raw transfer]
-
NACID_H_8(4Q5S)
RPOB_THET8
[Raw transfer]
-
NACID_H_8(4OIP)
RPOB_THET8
[Raw transfer]
-
NACID_H_13(4G7Z)
RPOB_THET8
[Raw transfer]
-
NACID_R_18(4YLP)
RPOB_ECOLI
[Raw transfer]
-
NACID_H_8(4OIR)
RPOB_THET8
[Raw transfer]
-
NACID_H_8(4OIN)
RPOB_THET8
[Raw transfer]
-
NACID_H_8(4G7O)
RPOB_THET8
[Raw transfer]
-
CHAIN_I_7(4MQ9)
RPOB_THET8
[Raw transfer]
-
NACID_H_8(4OIQ)
RPOB_THET8
[Raw transfer]
-
NACID_H_8(4G7H)
RPOB_THET8
[Raw transfer]
-
CHAIN_H_8(4Q4Z)
RPOB_THET8
[Raw transfer]
-
NACID_R_16(4G7H)
RPOB_THET8
[Raw transfer]
-
NACID_R_17(4G7O)
RPOB_THET8
[Raw transfer]
-
NACID_G_7(4OIQ)
RPOB_THET8
[Raw transfer]
-
CHAIN_M_13(4MEX)
RPOB_ECOLI
[Raw transfer]
-
CHAIN_N_14(4MEX)
RPOB_ECOLI
[Raw transfer]
-
NACID_Z_16(4WQS)
RPOB_THET8
[Raw transfer]
-
NACID_G_1(2O5J)
RPOB_THET8
[Raw transfer]
-
NACID_G_1(2O5I)
RPOB_THET8
[Raw transfer]
-
NACID_X_4(2O5I)
RPOB_THET8
[Raw transfer]
-
NACID_R_18(4YLO)
RPOB_ECOLI
[Raw transfer]
-
NACID_G_7(4G7H)
RPOB_THET8
[Raw transfer]
-
NACID_P_16(4S20)
?
[Raw transfer]
-
NACID_X_4(2PPB)
RPOB_THET8
[Raw transfer]
-
NACID_U_21(3AOI)
RPOB_THET8
[Raw transfer]
-
NACID_X_4(2O5J)
RPOB_THET8
[Raw transfer]
-
NACID_I_13(4WQS)
RPOB_THET8
[Raw transfer]
-
NACID_G_1(2PPB)
RPOB_THET8
[Raw transfer]
-
NACID_R_15(4G7Z)
RPOB_THET8
[Raw transfer]
-
NACID_Q_17(3AOI)
RPOB_THET8
[Raw transfer]
-
NACID_Q_17(3AOH)
RPOB_THET8
[Raw transfer]
-
NACID_S_19(3AOI)
RPOB_THET8
[Raw transfer]
-
107 HHSearch 84.8656% -57 - C6 -2A6H - RPOB_THET8 -
30 PsiBlast_CBE 84.4357% -59 - C6 -4MQ9 5.1 RPOB_THET8
34 PsiBlast_CBE 84.3257% -61 - C6 -4G7H 3.8 RPOB_THET8
26 PsiBlast_CBE 84.0657% -61 - C6 -4OIQ 3.7 RPOB_THET8
28 PsiBlast_CBE 83.9657% -58 - C6 -4OIO 3.4 RPOB_THET8
17 PsiBlast_PDB 83.9257% -60 - C6 -4G7H 3.4 RPOB_THET8
24 PsiBlast_CBE 83.9057% -60 - C6 -4Q4Z 4.8 RPOB_THET8
33 PsiBlast_CBE 83.8557% -55 - C6 -4G7O 3.9 RPOB_THET8
27 PsiBlast_CBE 83.8557% -59 - C6 -4OIP 4.2 RPOB_THET8
18 PsiBlast_PDB 83.7557% -57 - C6 -4G7O 4.4 RPOB_THET8
29 PsiBlast_CBE 83.7157% -61 - C6 -4OIN 4.3 RPOB_THET8
25 PsiBlast_CBE 83.5957% -59 - C6 -4OIR 3.9 RPOB_THET8
98 Fugue 83.3553% -58 - C6 -3LU0 - RPOB_ECOLI -
19 PsiBlast_PDB 83.2757% -55 - C6 -4G7Z 3.3 RPOB_THET8
23 PsiBlast_CBE 83.2157% -58 - C6 -4Q5S 2.2 RPOB_THET8
32 PsiBlast_CBE 83.0057% -56 - C6 -4G7Z 3.4 RPOB_THET8
31 PsiBlast_CBE 83.0057% -55 - C6 -4GZZ - RPOB_THET8 -
50 PsiBlast_CBE 82.7056% -57 - C6 -1YNJ - RPOB_THEAQ -
20 PsiBlast_PDB 82.6057% -59 - C6 -4GZY - RPOB_THET8 -
42 PsiBlast_CBE 82.0257% -53 - C6 -2BE5 - RPOB_THET8 -
15 PsiBlast_PDB 81.7957% -58 - C6 -3AOH 2.5 RPOB_THET8
16 PsiBlast_PDB 81.5257% -57 - C6 -3AOI 2.3 RPOB_THET8
37 PsiBlast_CBE 81.1257% -57 - C6 -3AOI 2.3 RPOB_THET8
41 PsiBlast_CBE 81.0657% -54 - C6 -2O5I 4.1 RPOB_THET8
10 PsiBlast_PDB 81.0657% -55 - C6 -2O5I 3.8 RPOB_THET8
40 PsiBlast_CBE 80.9257% -55 - C6 -2O5J 4.2 RPOB_THET8
38 PsiBlast_CBE 80.9257% -57 - C6 -3AOI 2.4 RPOB_THET8
12 PsiBlast_PDB 80.6757% -54 - C6 -2PPB 4.8 RPOB_THET8
22 PsiBlast_CBE 80.5657% -56 - C6 -4WQS 3.5 RPOB_THET8
11 PsiBlast_PDB 80.2957% -55 - C6 -2O5J 3.4 RPOB_THET8
39 PsiBlast_CBE 80.0357% -53 - C6 -2PPB 3.6 RPOB_THET8
21 PsiBlast_CBE 79.8457% -55 - C6 -4WQS 4.2 RPOB_THET8
81 PsiBlast_CBE 65.2660% -49 - C6 -4MEX 2.0 RPOB_ECOLI
82 PsiBlast_CBE 64.6460% -49 - C6 -4MEX 2.6 RPOB_ECOLI
66 PsiBlast_CBE 63.3760% -49 - C6 -4YLN 1.6 RPOB_ECOLI
65 PsiBlast_CBE 63.3260% -43 - C6 -4YLN 2.6 RPOB_ECOLI
62 PsiBlast_CBE 63.2560% -44 - C6 -4YLO 1.5 RPOB_ECOLI
63 PsiBlast_CBE 63.1760% -50 - C6 -4YLO 2.6 RPOB_ECOLI
59 PsiBlast_CBE 63.1360% -46 - C6 -4YLP 2.7 RPOB_ECOLI
60 PsiBlast_CBE 62.3960% -52 - C6 -4YLP 2.0 RPOB_ECOLI
80 PsiBlast_CBE 59.5160% -45 - C6 -4S20 3.2 ?