@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA0508: (2016-03-16 )
MVQSLHEFLEENINYLKENGLYNEIDTIEGANGPEIKINGKSYINLSSNNYLGLATNEDLKSAAKAAIDTHGVGAGAVRTINGTLDLHDELEETLAKFKGTEAAIAYQSGFNCNMAAISAVMNKNDAILSDELNHASIIDGCRLSKAKIIRVNHSDMDDLRAKAKEAVESGQYNKVMYITDGVFSMDGDVAKLPEIVEIAEEFGLLTYVDDAHGSGVMGKGAGTVKHFGLQDKIDFQIGTLSKAIGVVGGYVAGTKELIDWLKAQSRPFLFSTSLAPGDTKAITEAVKKLMDSTELHDKLWDNAQYLKNGLSKLGYDTGESETPITPVIIGDEKTTQEFSKRLKDEGVYVKSIVFPTVPRGTGRVRNMPTAAHTKDMLDEAIAAYEKVGKEMKLI

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PLS_A_2(2W8J)
?
[Raw transfer]



KAM_A_5(1DJ9)
BIOF_ECOLI
[Raw transfer]



PLS_A_2(2W8W)
?
[Raw transfer]



PMP_A_2(2XBN)
?
[Raw transfer]



PLP_A_3(3TQX)
?
[Raw transfer]



PLP_A_3(3TQX)
?
[Raw transfer]



PLP_A_3(3A2B)
?
[Raw transfer]



PLP_A_3(3A2B)
?
[Raw transfer]



PLP_A_5(1DJE)
BIOF_ECOLI
[Raw transfer]



LLF_A_3(2G6W)
BIOF_ECOLI
[Raw transfer]



MYB_A_4(4BMK)
?
[Raw transfer]



MYB_B_8(4BMK)
?
[Raw transfer]



AKB_A_3(1FC4)
KBL_ECOLI
[Raw transfer]



AKB_A_3(1FC4)
KBL_ECOLI
[Raw transfer]
2 PsiBlast_PDB 97.5441% -67 - C1 -1FC4 5.2 KBL_ECOLI
45 HHSearch 94.8641% -64 - C1 -1FC4 5.2 KBL_ECOLI
40 HHSearch 93.4540% -69 * C1 *3TQX 3.9 ?
1 PsiBlast_PDB 92.1842% -64 - C1 -3A2B 3.4 ?
41 HHSearch 91.1442% -64 - C1 -3A2B 3.4 ?
3 PsiBlast_PDB 88.0439% -64 - C1 -3TQX 3.9 ?
32 Fugue 85.6134% -65 - C1 -2BWN - HEM1_RHOCB -
22 PsiBlast_CBE 85.0235% -60 - C1 -2BWP - HEM1_RHOCB -
14 PsiBlast_PDB 83.8335% -57 - C1 -2BWO - HEM1_RHOCB -
43 HHSearch 83.6735% -63 - C1 -2BWN - HEM1_RHOCB -
23 PsiBlast_CBE 83.2335% -59 - C1 -2BWP - HEM1_RHOCB -
30 PsiBlast_CBE 83.1235% -63 - C1 -2BWN - HEM1_RHOCB -
25 PsiBlast_CBE 82.9835% -58 - C1 -2BWO - HEM1_RHOCB -
16 PsiBlast_PDB 82.5035% -60 - C1 -2BWN - HEM1_RHOCB -
28 PsiBlast_CBE 82.0835% -60 - C1 -2BWN - HEM1_RHOCB -
24 PsiBlast_CBE 81.9735% -58 - C1 -2BWP - HEM1_RHOCB -
27 PsiBlast_CBE 81.7035% -59 - C1 -2BWO - HEM1_RHOCB -
26 PsiBlast_CBE 81.5935% -56 - C1 -2BWO - HEM1_RHOCB -
29 PsiBlast_CBE 81.4335% -58 - C1 -2BWN - HEM1_RHOCB -
15 PsiBlast_PDB 80.4335% -58 - C1 -2BWP - HEM1_RHOCB -
7 PsiBlast_PDB 76.8332% -62 - C1 -2XBN 4.0 ?
12 PsiBlast_PDB 76.6432% -60 - C1 -4BMK 3.2 ?
6 PsiBlast_PDB 74.7932% -60 - C1 -2W8J 4.7 ?
21 PsiBlast_CBE 74.5632% -61 - C1 -4BMK 1.9 ?
8 PsiBlast_PDB 74.2632% -60 - C1 -2W8W 4.3 ?
18 PsiBlast_PDB 69.0534% -59 - C1 -2G6W 3.8 BIOF_ECOLI
20 PsiBlast_PDB 67.2832% -54 - C1 -1DJE 4.8 BIOF_ECOLI
19 PsiBlast_PDB 65.3032% -50 - C1 -1DJ9 5.1 BIOF_ECOLI