@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA0516: (2016-03-16 )
MTNDIYFMTLAIEEAKKAAQLGEVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLYVTLEPCVMCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQSNFNHRAIVDKGVLKEACSTLLTTFFKNLRANKKSTN

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

HPY_A_8(1P6O)
FCY1_YEAST
[Raw transfer]




DUC_A_5(1UAQ)
FCY1_YEAST
[Raw transfer]




HPY_B_7(1P6O)
FCY1_YEAST
[Raw transfer]




HPY_A_8(1P6O)
FCY1_YEAST
[Raw transfer]




DUC_B_6(1UAQ)
FCY1_YEAST
[Raw transfer]




IMD_B_6(1WKQ)
GUAD_BACSU
[Raw transfer]




CHAIN_H_4(2B3J)
TADA_STAAM
[Raw transfer]

-

IMD_A_5(1WKQ)
GUAD_BACSU
[Raw transfer]




GOL_C_14(2B3J)
TADA_STAAM
[Raw transfer]




GOL_B_12(2B3J)
TADA_STAAM
[Raw transfer]




CHAIN_G_3(2B3J)
TADA_STAAM
[Raw transfer]

-

CHAIN_E_1(2B3J)
TADA_STAAM
[Raw transfer]

-

CHAIN_E_1(2B3J)
TADA_STAAM
[Raw transfer]

-

CHAIN_F_2(2B3J)
TADA_STAAM
[Raw transfer]

-

23 PsiBlast_CBE 97.61100%-124 - C4 -2B3J 8.2 TADA_STAAM
22 PsiBlast_CBE 97.08100%-127 - C4 -2B3J 9.2 TADA_STAAM
21 PsiBlast_CBE 96.49100%-121 - C4 -2B3J 10.3 TADA_STAAM
59 HHSearch 95.51100%-126 - C4 -2B3J 8.4 TADA_STAAM
1 PsiBlast_PDB 95.51100%-126 - C4 -2B3J 8.4 TADA_STAAM
60 HHSearch 82.2345%-115 - C4 -2NX8 - TADA_STRP6 -
3 PsiBlast_PDB 81.7046%-118 - C4 -2NX8 - TADA_STRP6 -
58 HHSearch 81.2043%-114 * C4 *1Z3A - TADA_ECOLI -
61 HHSearch 79.7449%-113 - C4 -1WWR - TADA_AQUAE -
27 PsiBlast_CBE 78.7743%-122 - C4 -1Z3A - TADA_ECOLI -
24 PsiBlast_CBE 78.6450%-112 - C4 -1WWR - TADA_AQUAE -
2 PsiBlast_PDB 78.6350%-109 - C4 -1WWR - TADA_AQUAE -
5 PsiBlast_PDB 78.5043%-119 - C4 -1Z3A - TADA_ECOLI -
25 PsiBlast_CBE 78.4150%-109 - C4 -1WWR - TADA_AQUAE -
4 PsiBlast_PDB 77.2646%-123 - C4 -3OCQ - ? -
26 PsiBlast_CBE 76.4550%-112 - C4 -1WWR - TADA_AQUAE -
17 PsiBlast_PDB 72.4037%-133 - C4 -2HXV - ? -
70 HHSearch 72.2537%-120 - C4 -2HXV - ? -
28 PsiBlast_CBE 70.6543%-110 - C4 -2A8N - TADA_AGRFC -
80 Fugue 70.3131%-120 - C4 -2B3Z - RIBD_BACSU -
66 HHSearch 67.0331% -95 - C4 -1P6O 4.0 FCY1_YEAST
7 PsiBlast_PDB 57.2948%-137 - C4 -1WKQ 4.1 GUAD_BACSU
29 PsiBlast_CBE 57.1448%-141 - C4 -1WKQ 4.1 GUAD_BACSU
10 PsiBlast_PDB 55.2840% -88 - C4 -1P6O 2.4 FCY1_YEAST
32 PsiBlast_CBE 53.9840% -80 - C4 -1UAQ 2.9 FCY1_YEAST
12 PsiBlast_PDB 53.7140% -84 - C4 -1UAQ 2.4 FCY1_YEAST
31 PsiBlast_CBE 53.6240% -80 - C4 -1P6O 2.5 FCY1_YEAST