@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA0639: (2016-03-17 )
MKKLTTILFQYKIFPVLMFLVSTGLGILVITQNILIADFLAKIIRHQFQGLWIVLFILLGVLLLRATVQFLNQWLGDTLAFKVKHMLRQRVIYKNNGHPIGEQMTILTENIDGLAPFYKSYLPQVFKSMMVPLIIIIAMFFIHFNTALIMLITAPFIPLFYIIFGLKTRDESKNQMTYLNQFSQRFLNIAKGLVTLKLFNRTEQTEKHIYDDSTQFRTLTMRILRSAFLSGLMLEFISMLGIGLVALEATLSLVVFHNIDFKTAAIAIILAPEFYNAIKDLGQAFHTGKQSEGASDVVFEFLEQPNYNNEFLLKYEENQKPFIQLTDISFRYDDSDRLVLNDLNLEIFKGDQIALVGPSGAGKSTLTHLIAGVYQPTIGTISTNQRDLNIGILSQQPYIFSASIKENITMFKDIENNTIEEVLDEVGLLDKVQSFTKGINTIIGEGGEMLSGGQMRRIELCRLLVMKPDLVIFDEPATGLDIQTEHMIQNVLFQHFKDTTMIVIAHRDNTIRHLQRRLYIENGRLIADDRNISVNITENGDDL

Atome Classification :

(45 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_H_8(2FGK)

[Raw transfer]




ANP_A_8(2ONJ)
Y1866_STAAM
[Raw transfer]




ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]




ANP_A_3(4PL0)
MCJD_ECOLX
[Raw transfer]




ATP_E_5(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_C_9(1MV5)
LMRA_LACLA
[Raw transfer]




ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]




128_A_2(2PMK)

[Raw transfer]




ADP_B_2(2FFB)

[Raw transfer]




ADP_A_5(2HYD)
Y1866_STAAM
[Raw transfer]




ATP_G_7(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_A_7(1MV5)
LMRA_LACLA
[Raw transfer]




ATP_H_8(2FGJ)

[Raw transfer]




ADP_A_3(3NHA)

[Raw transfer]




ATP_A_2(3NH9)

[Raw transfer]




12D_A_2(3B5J)

[Raw transfer]




ADP_A_2(3NHB)

[Raw transfer]




ANP_B_6(4PL0)
MCJD_ECOLX
[Raw transfer]




ADP_B_2(2FFA)

[Raw transfer]




ATP_A_7(1MV5)
LMRA_LACLA
[Raw transfer]




ATP_F_6(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




ATP_C_11(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_D_12(1XEF)

[Raw transfer]




ATP_A_9(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_D_5(3VX4)
?
[Raw transfer]




ATP_B_10(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_A_3(3VX4)
?
[Raw transfer]




ATP_G_7(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_C_9(1MV5)
LMRA_LACLA
[Raw transfer]




ADP_B_8(1MV5)
LMRA_LACLA
[Raw transfer]




ATP_A_7(1MV5)

[Raw transfer]




1 PsiBlast_PDB 79.0525%-108 - C2 -2HYD 4.4 Y1866_STAAM
2 PsiBlast_PDB 78.4525%-108 - C2 -2ONJ 6.0 Y1866_STAAM
111 HHSearch 76.9922% -99 - C1 -3B60 - MSBA_SALTY -
131 Fugue 76.4921% -98 * C1 *3B60 - MSBA_SALTY -
112 HHSearch 74.8520%-111 - C2 -3WMG - ? -
110 HHSearch 74.8022%-107 - C2 -3ZDQ - ABCBA_HUMAN -
11 PsiBlast_PDB 73.7626% -99 - C2 -4AYT - ABCBA_HUMAN -
12 PsiBlast_PDB 73.1726%-101 - C2 -4AYX - ABCBA_HUMAN -
7 PsiBlast_PDB 73.1524% -94 - C2 -3B60 - MSBA_SALTY -
13 PsiBlast_PDB 71.1526% -99 - C2 -3ZDQ - ABCBA_HUMAN -
3 PsiBlast_PDB 70.2825%-107 - C2 -4A82 - Y1866_STAAM -
134 Fugue 69.4523%-109 - C1 -4F4C - PGP1_CAEEL -
14 PsiBlast_PDB 58.5627% -94 - C2 -4AYW - ABCBA_HUMAN -
60 PsiBlast_CBE 56.3831%-104 - C2 -3NH6 - -
57 PsiBlast_CBE 55.1731%-106 - C2 -3NHB 6.7
127 HHSearch 54.8233%-101 - C2 -1MV5 4.8 LMRA_LACLA
58 PsiBlast_CBE 54.4031%-105 - C2 -3NHA 6.5
39 PsiBlast_CBE 54.3634%-114 - C2 -2FGK 7.3
59 PsiBlast_CBE 54.2631%-106 - C2 -3NH9 6.2
24 PsiBlast_CBE 54.1332%-112 - C2 -4M1M - MDR1A_MOUSE -
42 PsiBlast_CBE 53.7934%-111 - C2 -2FGK 7.4 HLYBP_ECOLX
41 PsiBlast_CBE 53.7834%-113 - C2 -2FGK 7.3 HLYBP_ECOLX
40 PsiBlast_CBE 53.5034%-111 - C2 -2FGK 6.7 HLYBP_ECOLX
49 PsiBlast_CBE 53.1534%-109 - C2 -1XEF 6.9
52 PsiBlast_CBE 53.0734%-109 - C2 -1XEF 6.6 HLYBP_ECOLX
61 PsiBlast_CBE 52.8232%-112 - C2 -4PL0 6.6 MCJD_ECOLX
46 PsiBlast_CBE 52.6734%-105 - C2 -2FGJ 7.3 HLYBP_ECOLX
38 PsiBlast_CBE 52.5534%-111 - C2 -3B5J 6.9
128 HHSearch 52.2733% -96 - C2 -2FF7 6.4
47 PsiBlast_CBE 52.2734%-105 - C2 -2FGJ 6.9 HLYBP_ECOLX
51 PsiBlast_CBE 52.2134%-107 - C2 -1XEF 7.1 HLYBP_ECOLX
35 PsiBlast_CBE 51.9934%-106 - C2 -2PMK 7.3
50 PsiBlast_CBE 51.9134%-108 - C2 -1XEF 7.0 HLYBP_ECOLX
48 PsiBlast_CBE 51.1634%-107 - C2 -2FFA 6.3
70 PsiBlast_CBE 51.1431%-112 - C2 -3VX4 6.4 ?
45 PsiBlast_CBE 51.0934%-109 - C2 -2FGJ 6.9 HLYBP_ECOLX
36 PsiBlast_CBE 50.9435%-107 - C2 -2FF7 6.4
62 PsiBlast_CBE 50.9132%-110 - C2 -4PL0 6.6 MCJD_ECOLX
43 PsiBlast_CBE 50.8134%-106 - C2 -2FFB 6.2
53 PsiBlast_CBE 50.1232% -99 - C2 -1MV5 3.0
54 PsiBlast_CBE 50.0732%-100 - C2 -1MV5 5.3 LMRA_LACLA
71 PsiBlast_CBE 49.8731%-109 - C2 -3VX4 6.9 ?
44 PsiBlast_CBE 49.4734%-109 - C2 -2FGJ 6.8
56 PsiBlast_CBE 48.9432% -96 - C2 -1MV5 4.8 LMRA_LACLA
55 PsiBlast_CBE 48.9032% -95 - C2 -1MV5 4.1 LMRA_LACLA