@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA0674: (2016-03-17 )
MSSQKKKISLFAFFLLTVITITLKTYFSYYVDFSLGVKGLVQNLILLMNPYSLVALVLSVFLFFKGKKAFWFMFIGGFLLTFLLYANVVYFRFFSDFLTFSTLNQVGNVESMGGAVSASFKWYDFVYFIDTLVYLFILIFKTKWLDTKAFSKKFVPVVMAASVALFFLNLAFAETDRPELLTRTFDHKYLVKYLGPYNFTVYDGVKTIENNQQKALASEDDLTKVLNYTKQRQTEPNPEYYGVAKKKNIIKIHLESFQTFLINKKVNGKEVTPFLNKLSSGKEQFTYFPNFFHQTGQGKTSDSEFTMDNSLYGLPQGSAFSLKGDNTYQSLPAILDQKQGYKSDVMHGDYKTFWNRDQVYKHFGIDKFYDATYYDMSDKNVVNLGLKDKIFFKDSANYQAKMKSPFYSHLITLTNHYPFTLDEKDATIEKSNTGDATVDGYIQTARYLDEALEEYINDLKKKGLYDNSVIMIYGDHYGISENHNNAMEKLLGEKITPAKFTDLNRTGFWIKIPGKSGGINNEYAGQVDVMPTILHLAGIDTKNYLMFGTDLFSKGHNQVVPFRNGDFITKDYKYVNGKIYSNKNNELITTQPADFEKNKKQVEKDLEMSDNVLNGDLFRFYKNPDFKKVNPSKYKYETGPKANSKK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GP9_A_4(2W5R)
LTAS_STAAW
[Raw transfer]




GP9_A_4(2W5S)
LTAS_STAAW
[Raw transfer]




GP9_A_4(2W5T)
LTAS_STAAW
[Raw transfer]




EDO_A_3(2W5Q)
LTAS_STAAW
[Raw transfer]




EDO_A_3(2W5Q)
LTAS_STAAW
[Raw transfer]




EDO_A_3(2W5Q)
LTAS_STAAW
[Raw transfer]




4 PsiBlast_PDB 99.4099% -60 - C3 -2W5R 3.5 LTAS_STAAW
61 Fugue 99.30100% -61 - C3 -2W5Q 2.7 LTAS_STAAW
1 PsiBlast_PDB 99.23100% -61 - C3 -2W5Q 2.7 LTAS_STAAW
3 PsiBlast_PDB 99.03100% -60 - C3 -2W5T 3.4 LTAS_STAAW
36 HHSearch 98.6799% -61 - C3 -2W5Q 2.7 LTAS_STAAW
2 PsiBlast_PDB 98.53100% -62 - C3 -2W5S 3.9 LTAS_STAAW
25 PsiBlast_CBE 86.5056% -55 - C3 -4UOR - ? -
26 PsiBlast_CBE 86.2356% -57 - C3 -4UOR - ? -
21 PsiBlast_CBE 86.1856% -55 - C3 -4UOR - ? -
29 PsiBlast_CBE 86.1756% -56 - C3 -4UOR - ? -
27 PsiBlast_CBE 86.1556% -56 - C3 -4UOR - ? -
24 PsiBlast_CBE 86.1056% -52 - C3 -4UOR - ? -
28 PsiBlast_CBE 86.0856% -56 - C3 -4UOR - ? -
30 PsiBlast_CBE 86.0556% -56 - C3 -4UOR - ? -
6 PsiBlast_PDB 86.0556% -56 - C3 -4UOR - ? -
32 PsiBlast_CBE 85.2856% -57 - C3 -4UOO - ? -
34 PsiBlast_CBE 85.1756% -58 - C3 -4UOO - ? -
5 PsiBlast_PDB 85.1056% -56 - C3 -4UOO - ? -
33 PsiBlast_CBE 84.9356% -58 - C3 -4UOO - ? -
31 PsiBlast_CBE 84.8956% -57 - C3 -4UOO - ? -